EP2M2 : Metabolomic Target Analyzes Manager

Version

0.3.2

Reuse compliance

Tests

Features

• Extraction of formats files of the metabolomics data acquisition devices of the P2M2 platform
  • gcms
  • openlabcds
  • masslynx-txt
  • masslynx-xml
  • xcalibur
• Analyzes concatenation
• Custom post-process
• Data base of:
  • External compound
  • Devices
  • Associated calibration curves

Installation

Requirements

• adminitrator rights
• docker
• docker-compose
• docker with sudo rights

Linux

1. Clone the repository
2. Define user and password for the database and the database name

cd EP2M2
echo "MY_PG_USER=<user_name>" > ./secrets/global.env
echo "MY_PG_PASSWORD=<password>" >> ./secrets/global.env
echo "MY_PG_DATABASE=<database_name>" >> ./secrets/global.env
echo "MY_PG_PORT=<port>" >> ./secrets/global.env

3. Launch the docker-compose

docker compose -f compose.yaml up -d

Contibution

let's go

Report issue

• Directly on github
• Send e-mail at team