fix sh getopts not found #122

oushujun · Dec 4, 2020 · 00decc8 · 00decc8
1 parent 90eed59
commit 00decc8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/EDTA_raw.pl b/EDTA_raw.pl
@@ -384,7 +384,7 @@
 	print STDERR "Species: $species\n";
 
 	# run TIR-Learner
-	`sh $TIR_Learner -g $genome -s $species -t $threads -l $maxint`;
+	`bash $TIR_Learner -g $genome -s $species -t $threads -l $maxint`;
 	`perl $rename_tirlearner ./TIR-Learner-Result/TIR-Learner_FinalAnn.fa | perl -nle 's/TIR-Learner_//g; print \$_' > $genome.TIR`;
 
 	# clean raw predictions with flanking alignment