Tools for improving throughput for bioinformatics data
Subdirectories
- parse_nexus: parse NEXUS data files
- zchunk: compress/decompress large files in parallel using MPI
- zlines: a tool for storing a large number of text lines in a compressed file and an API for accessing those lines efficiently
Tools in this folder
- extract: a Python script for extracting a subrange of a file. For example, the command "extract foo 2 5" will copy 5 bytes of the file "foo", starting at offset 2 (the third byte) to standard output.