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    216 repositories

    • bih-data-commons

      Public
      BIH Data Commons using Gen3.2
      TypeScript
      •
      Apache License 2.0
      •16•2•0•9•Updated Jan 23, 2025Jan 23, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•2•0•6•Updated Jan 23, 2025Jan 23, 2025

    • gen3-workflow

      Public
      Gen3 service for GA4GH TES integration
      Python
      •
      Apache License 2.0
      •0•1•0•6•Updated Jan 23, 2025Jan 23, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •5•2•0•14•Updated Jan 23, 2025Jan 23, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •7•8•0•202•Updated Jan 23, 2025Jan 23, 2025

    • metadata-service

      Public
      The Metadata Service provides API for retrieving JSON metadata of GUIDs.
      gen3
      Python
      •
      Apache License 2.0
      •10•16•1•6•Updated Jan 23, 2025Jan 23, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •67•41•99•93•Updated Jan 23, 2025Jan 23, 2025

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•0•0•8•Updated Jan 23, 2025Jan 23, 2025

    • heal-platform-sdk

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•4•Updated Jan 23, 2025Jan 23, 2025

    • dcf-dataservice

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•24•Updated Jan 23, 2025Jan 23, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      TypeScript
      •
      Apache License 2.0
      •16•0•0•2•Updated Jan 23, 2025Jan 23, 2025

    • prometheus-data-platform

      Public template
      Gen3 based UI for Prometheus Data Platform
      TypeScript
      •
      Apache License 2.0
      •16•0•0•3•Updated Jan 23, 2025Jan 23, 2025

    • staging-HEAL-platform-documentation

      Public
      staging and dev area for public documentation for the HEAL platform
      HTML
      •8•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•79•Updated Jan 23, 2025Jan 23, 2025

    • manifestservice

      Public
      create and read manifests from s3
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Jan 23, 2025Jan 23, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•184•Updated Jan 23, 2025Jan 23, 2025

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.5k•1•0•40•Updated Jan 23, 2025Jan 23, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      gen3
      Python
      •
      Apache License 2.0
      •48•38•3•79•Updated Jan 23, 2025Jan 23, 2025

    • gen3-spark

      Public
      gen3
      Dockerfile
      •
      Apache License 2.0
      •1•1•0•2•Updated Jan 22, 2025Jan 22, 2025

    • .github

      Public template
      For default health files
      Apache License 2.0
      •2•0•0•10•Updated Jan 22, 2025Jan 22, 2025

    • argo-wrapper

      Public
      Wrapping Argo into nice API for VADC GWAS app
      vadc
      Python
      •
      Apache License 2.0
      •3•3•0•5•Updated Jan 22, 2025Jan 22, 2025

    • commons-frontend-app

      Public template
      Gen3 Data Commons template repository for gen3 frontend framework
      TypeScript
      •
      Apache License 2.0
      •16•4•1•10•Updated Jan 21, 2025Jan 21, 2025

    • workspace-token-service

      Public
      gen3
      Python
      •
      Apache License 2.0
      •3•3•0•3•Updated Jan 21, 2025Jan 21, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •139•0•0•1•Updated Jan 21, 2025Jan 21, 2025

    • gen3-community

      Public
      Repo for creating issues and feature requests for the Gen3 Data Platform
      Apache License 2.0
      •0•2•0•0•Updated Jan 21, 2025Jan 21, 2025

    • heal-data-commons

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•6•Updated Jan 21, 2025Jan 21, 2025

    • audit-service

      Public
      Python
      •
      Apache License 2.0
      •0•5•0•0•Updated Jan 21, 2025Jan 21, 2025

    • docker-nginx

      Public
      Official NGINX Dockerfiles
      Shell
      •
      BSD 2-Clause "Simplified" License
      •1.7k•0•0•1•Updated Jan 21, 2025Jan 21, 2025

    • google-bucket-manifest

      Public
      Repos to store CDIS Google dataflow templates
      Python
      •
      Apache License 2.0
      •0•0•0•75•Updated Jan 21, 2025Jan 21, 2025

    • gen3-discovery-ai

      Public
      Gen3 Discovery AI
      Python
      •
      Apache License 2.0
      •0•1•0•14•Updated Jan 20, 2025Jan 20, 2025