Repositories list

• SubstratProduitClassifier

  Public
  Analyse des features expérimentales liées au cumul d'oxygène à l'aide de modèles de régression linéaire, quadratique et cubique. Le programme classe les features en substrats, produits, transitoires et recyclés, et exporte les résultats dans un fichier CSV

  Python

  •0•0•0•0•Updated Dec 24, 2024Dec 24, 2024

• EP2M2

  Public
  Metabolomics target analyzes manager

  websitemetabolomicsinrae+ 1p2m2

  TypeScript

  •1•1•21•0•Updated Dec 6, 2024Dec 6, 2024

• service-p2m2tools-api

  Public
  Service to parse the formats of the metabolomics data acquisition devices of the P2M2 platform

  Scala

  •

  MIT License

  •1•0•4•1•Updated Dec 5, 2024Dec 5, 2024

• scala-sbt

  Public
  Docker image scala-sbt

  Dockerfile

  •1•0•1•0•Updated Dec 4, 2024Dec 4, 2024

• encoder-ontology-match-abstract

  Public
  Python

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• ChEBI_REST_API

  Public
  Java

  •

  MIT License

  •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

• dataset-description-metabolites-litsc

  Public
  JavaScript

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• forum-diseases-chem-nextflow

  Public
  Nextflow scripts to generate a release of the FORUM project

  Nextflow

  •0•1•0•0•Updated Jul 9, 2024Jul 9, 2024

• DiscoveryWorkout

  Public
  HTML

  •0•0•0•0•Updated Jul 7, 2024Jul 7, 2024

• plant_metabolic_flows_influx_si

  Public
  Shell

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• tp-discovery-websempilot

  Public
  HTML

  •1•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• oligopeptides_matching

  Public
  In order to compute from amino acids molecular weight the putative oligomers of various oligomerization degree

  R

  •

  Other

  •0•0•6•0•Updated Jun 27, 2024Jun 27, 2024

• workflow-kg-plants-taxon-compound

  Public
  A workflow that generates a knowledge graph from a list of DOIs using the tool '# End-to-end Relation Extraction on the natural-product literature' from IDIAP.

  Python

  •0•0•4•0•Updated May 6, 2024May 6, 2024

• facade-scalajs-N3.js

  Public
  ScalaJS facade to build N3.js application

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• facade-scalajs-comunica-query-sparql

  Public
  Scala.js Facade of the Comunica SPARQL RDFJS Init Actor

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• facade-scalajs-rdfxml-streaming-parser

  Public
  Scala.js Facade of the RDF/XML Streaming Parser library

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• tools-metabolomics

  Public
  Galaxy tools for metabolomics maintained by Workflow4Metabolomics

  R

  •

  GNU General Public License v3.0

  •27•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• service-flask-thermorawfileparser-openms

  Public
  A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.

  flaskmetabolomicsopenms+ 1thermofileparser

  Python

  •0•0•1•0•Updated Apr 9, 2024Apr 9, 2024

• stream-reader-mzxml

  Public
  A Scala library specializing in stream processing of mzXML files, based on FS2

  scalastreamfs2+ 1mass-spectrometry

  Scala

  •0•0•1•0•Updated Feb 21, 2024Feb 21, 2024

• discovery

  Public
  Discovery provides a powerful toolset for developers who are looking to build UIs using RDF data in an a robust software development process

  scalasparqlrdf+ 5discoverysemantic-webscalajssparql-query-builderendpoint-discovery

  Scala

  •

  MIT License

  •1•0•41•2•Updated Feb 21, 2024Feb 21, 2024

• hubportal

  Public
  The P2M2 Central Hub serves as the centralized gateway to the dematerialized tools developed by the P2M2 metabolomics platform

  MIT License

  •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• docker-XcmsViewer

  Public
  Dockerized XcmsViewer

  R

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Feb 19, 2024Feb 19, 2024

• p2m2tools

  Public
  Development of bioinformatics tools/software related to P2M2 metabolomics platform activities

  scalafunctional-programmingmetabolomics+ 2metabolomics-studiesinrae

  Scala

  •

  MIT License

  •0•1•9•0•Updated Jan 18, 2024Jan 18, 2024

• xcms-p2m2-tools

  Public
  Scala

  •

  MIT License

  •0•0•0•0•Updated Nov 17, 2023Nov 17, 2023

• mzxml-glucosinolate-analyser

  Public
  Ion detection eligible for characterization of glucosinolate and phenolic metabolites

  Scala

  •0•0•10•2•Updated Sep 28, 2023Sep 28, 2023

• mgf-p2m2-tools

  Public
  Scala parser for generic MGF mascot files containing MS/MS data

  Scala

  •

  MIT License

  •0•0•2•0•Updated Jul 22, 2023Jul 22, 2023

• ihm-githubio-gcms2isocor

  Public
  provides a simple interface for ingesting gcms files and integrating these results into isocor format

  Scala

  •

  MIT License

  •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

• service-rdf-database-deployment

  Public
  Scala

  •0•0•4•1•Updated Jun 19, 2023Jun 19, 2023

• collect-target-metabolomics-study

  Public
  Scala

  •

  MIT License

  •0•0•11•0•Updated May 5, 2023May 5, 2023

• positional-carbon13-enrichment

  Public
  Positional 13C-enrichments were calculated by combining mean 13C-enrichments of multiple fragments that shared part of the same carbon backbone

  Scala

  •

  MIT License

  •0•0•1•0•Updated Apr 5, 2023Apr 5, 2023