Epiverse-TRACE

All

59 repositories

tutorials-late
Public
R
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Other
•1•2•37•4•Updated Jan 30, 2025Jan 30, 2025
ColOpenData
Public
ColOpenData is a package that acquires and wrangles Colombian socioeconomic, geospatial and climate data
r maps climate data-package colombia r-package demographics
R
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Other
•1•11•5•2•Updated Jan 30, 2025Jan 30, 2025
cleanepi
Public
R package to clean and standardize epidemiological data
r epidemiology r-package data-cleaning epiverse
R
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Other
•3•8•20•3•Updated Jan 30, 2025Jan 30, 2025
epiversetheme
Public
infrastructure r r-package organisation-tool community-health pkgdown-template epiverse
SCSS
•1•0•4•1•Updated Jan 30, 2025Jan 30, 2025
epiverse-trace.github.io
Public
Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally
blog epiverse quarto-website
R
•3•3•11•3•Updated Jan 30, 2025Jan 30, 2025
serofoi
Public
Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
bayesian-methods epidemiology r-package antibodies serological-surveys stan-language epiverse r
R
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Other
•4•18•26•5•Updated Jan 30, 2025Jan 30, 2025
etdashboard
Public
Developer dashboard for a universe overview of Epiverse-TRACE packages
R
•0•1•0•0•Updated Jan 29, 2025Jan 29, 2025
epi-training-kit
Public template
An e-learning strategy for training on analysis, modelling and response to outbreaks and epidemics in Latin-America and the Caribbean
training data-science e-learning epidemics
HTML
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Creative Commons Attribution 4.0 International
•1•7•0•0•Updated Jan 28, 2025Jan 28, 2025
superspreading
Public
Estimation of individual level variation in transmission
epidemiology r-package disease-transmission epiverse r
R
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Other
•2•4•7•0•Updated Jan 28, 2025Jan 28, 2025
vaccineff
Public
R package with tools for estimating vaccine effectiveness and vaccine related metrics
epidemiology r-package epiverse vaccine-effectiveness r
R
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Other
•3•16•1•2•Updated Jan 28, 2025Jan 28, 2025
sivirep
Public
Data Wrangling and Automated Reports from 'SIVIGILA' source
public-health colombia r-package epidemiological-surveillance epiverse r
R
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Other
•4•43•6•3•Updated Jan 28, 2025Jan 28, 2025
etstats
Public
r r-package organisation-tool
R
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Creative Commons Zero v1.0 Universal
•0•1•2•0•Updated Jan 28, 2025Jan 28, 2025
safeframe
Public
Tagging, validating, and safeguarding data to help harden data pipelines.
R
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Other
•0•0•7•4•Updated Jan 28, 2025Jan 28, 2025
episoap
Public
[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates
pipelines literate-programming epidemiology r-package decision-support automated-report rmarkdown-templates epiverse outbreak-analysis r
R
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Other
•2•5•31•2•Updated Jan 28, 2025Jan 28, 2025
epitkit
Public
R
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Other
•2•0•6•2•Updated Jan 28, 2025Jan 28, 2025
tutorials-middle
Public
R
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Other
•2•3•66•2•Updated Jan 28, 2025Jan 28, 2025
research-compendium
Public
reproducible-research rstats pre-alpha english-language research-compendium carpentries-workbench
R
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Other
•0•1•19•1•Updated Jan 28, 2025Jan 28, 2025
tutorials-early
Public
R
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Other
•2•2•40•4•Updated Jan 28, 2025Jan 28, 2025
tutorials
Public
rstats pre-alpha english-language epidemic-modelling carpentries-workbench outbreak-analysis
R
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Other
•4•3•38•3•Updated Jan 28, 2025Jan 28, 2025
git-rstudio-basics
Public
Version Control with Git using Rstudio
github git version-control rstudio novice alpha-stage carpentries-workbench
R
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Other
•931•1•23•0•Updated Jan 28, 2025Jan 28, 2025
epiparameter
Public
R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases
r probability-distribution epidemiology data-package r-package data-access epiverse
R
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Other
•11•33•49•0•Updated Jan 27, 2025Jan 27, 2025
simulist
Public
An R package for simulating line lists
r epidemiology r-package outbreaks linelist epiverse
R
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Other
•1•9•8•2•Updated Jan 24, 2025Jan 24, 2025
iraca
Public
Agent-Based model simulation of mosquito-human interaction in the Colombian and LAC setting
r rcpp agent-based-modeling r-package vector-borne-diseases
C++
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Other
•1•1•7•0•Updated Jan 24, 2025Jan 24, 2025
varnish
Public
Epiverse-TRACE fork of the Carpentries' workbench varnish package
SCSS
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Other
•34•0•0•2•Updated Jan 22, 2025Jan 22, 2025
cfr
Public
R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
r epidemiology r-package health-outcomes case-fatality-rate epidemic-modelling sdg-3 epiverse outbreak-analysis
R
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Other
•4•13•10•3•Updated Jan 21, 2025Jan 21, 2025
hex-stickers
Public
logos epiverse
JavaScript
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MIT License
•0•0•0•0•Updated Jan 21, 2025Jan 21, 2025
sandpaper
Public
User Interface for The Carpentries Workbench
R
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Other
•30•0•0•1•Updated Jan 21, 2025Jan 21, 2025
epimodelac
Public
Training materials for the epimodelac workshop
r rstats carpentries-workbench
R
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Other
•4•8•11•2•Updated Jan 21, 2025Jan 21, 2025
tutorials-middle-es
Public
0•0•1•0•Updated Jan 20, 2025Jan 20, 2025
packagetemplate
Public template
Template of an R package with standard Epiverse-TRACE automation
r r-package github-template template-repository
R
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Other
•4•7•13•2•Updated Jan 18, 2025Jan 18, 2025