Repositories list

• ribosome-profiling

  Public
  Nextflow

  •

  MIT License

  •2•1•0•0•Updated Sep 25, 2023Sep 25, 2023

• PSI_Sigma_pipeline

  Public
  Nextflow

  •1•0•0•1•Updated Jul 19, 2023Jul 19, 2023

• m-cellranger

  Public
  Dockerfile

  •0•1•0•0•Updated Mar 24, 2023Mar 24, 2023

• rnaseq

  Public
  RNA-Seq pipeline

  workflowrna-seqpipeline+ 2nextflownextflow-pipelines

  Nextflow

  •

  MIT License

  •6•3•0•1•Updated Mar 22, 2023Mar 22, 2023

• beenet

  Public
  Dockerfile

  •0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

• ont_variant_calling

  Public
  Python

  •0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

• variant_calling_with_umis

  Public
  Dockerfile

  •0•0•0•0•Updated Dec 28, 2022Dec 28, 2022

• ocpu_docker

  Public
  Dockerfile

  •1•0•0•0•Updated Dec 16, 2022Dec 16, 2022

• scrna_seaurat

  Public
  Nextflow

  •1•0•0•0•Updated Dec 11, 2022Dec 11, 2022

• vsuite-studio

  Public
  Shell

  •0•0•0•0•Updated Nov 30, 2022Nov 30, 2022

• cellranger

  Public
  Nextflow

  •1•0•0•0•Updated Nov 18, 2022Nov 18, 2022

• sailor

  Public
  Nextflow

  •1•0•0•1•Updated Oct 10, 2022Oct 10, 2022

• SigProfiler

  Public
  Python

  •1•1•0•0•Updated Oct 10, 2022Oct 10, 2022

• jupyter-notebook

  Public
  Dockerfile

  •0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

• nextflow

  Public
  A DSL for data-driven computational pipelines

  Groovy

  •

  Apache License 2.0

  •651•0•0•0•Updated Aug 26, 2022Aug 26, 2022

• isee

  Public
  R

  •1•0•0•0•Updated Aug 15, 2022Aug 15, 2022

• slamseq_pipeline

  Public
  Nextflow

  •2•0•0•0•Updated Aug 4, 2022Aug 4, 2022

• help

  Public
  0•0•0•0•Updated Jul 28, 2022Jul 28, 2022

• cageseq_pipeline

  Public
  Dockerfile

  •

  MIT License

  •2•0•0•0•Updated Jul 27, 2022Jul 27, 2022

• graybuck2021_scatacseq_pipeline

  Public
  Dockerfile

  •

  MIT License

  •2•0•0•0•Updated Jul 27, 2022Jul 27, 2022

• tasic2018_scrnaseq_pipeline

  Public
  Nextflow

  •

  MIT License

  •1•0•0•0•Updated Jul 27, 2022Jul 27, 2022

• initialrun-docker

  Public
  docker image for DolphinNext initial run

  Dockerfile

  •

  MIT License

  •1•0•0•0•Updated Jul 26, 2022Jul 26, 2022

• pacbioaav

  Public
  R

  •1•0•0•0•Updated Jun 14, 2022Jun 14, 2022

• demultiplex

  Public
  Nextflow

  •1•0•0•0•Updated May 3, 2022May 3, 2022

• indrop

  Public
  Nextflow

  •1•0•0•0•Updated Apr 6, 2022Apr 6, 2022

• gatk4

  Public
  Nextflow

  •1•0•0•0•Updated Apr 5, 2022Apr 5, 2022

• VariantAnnotation

  Public
  Dockerfile

  •1•0•0•0•Updated Mar 21, 2022Mar 21, 2022

• exomeseq

  Public
  Dockerfile

  •1•0•0•0•Updated Mar 21, 2022Mar 21, 2022

• jupyter

  Public
  Dockerfile

  •

  MIT License

  •2•0•0•0•Updated Mar 17, 2022Mar 17, 2022

• jupyter-base-notebook

  Public
  Shell

  •0•0•0•0•Updated Mar 14, 2022Mar 14, 2022