Repositories list

• tcr_pmhc

  Public
  Predicting neoantigen and T-cell receptor binding by integrating structural context and sequence evolutionary conservation

  bioinformaticsartificial-intelligenceprotein-folding

  Python

  •0•1•0•2•Updated Dec 15, 2024Dec 15, 2024

• alphafold3

  Public
  AlphaFold 3 inference pipeline.

  Python

  •

  Other

  •714•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• llama-recipes

  Public
  Scripts for fine-tuning Meta Llama with composable FSDP & PEFT methods to cover single/multi-node GPUs. Supports default & custom datasets for applications such as summarization and Q&A. Supporting a number of candid inference solutions such as HF TGI, VLLM for local or cloud deployment. Demo apps to showcase Meta Llama for WhatsApp & Messenger.

  Jupyter Notebook

  •2.4k•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• falcon2

  Public
  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• alphafold

  Public
  Open source code for AlphaFold.

  Python

  •

  Apache License 2.0

  •2.3k•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• llama3

  Public
  The official Meta Llama 3 GitHub site

  Python

  •

  Other

  •3.2k•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• AF-MultiDomain

  Public
  MIT License

  •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

• foldseek-client

  Public
  Python

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• alphafold_trainer

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated May 27, 2024May 27, 2024

• bioinfo.ict.ac.cn

  Public
  www

  MIT License

  •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• website

  Public
  MIT License

  •0•1•0•0•Updated Apr 2, 2024Apr 2, 2024

• msa-suite

  Public
  Python

  •

  Apache License 2.0

  •0•2•0•0•Updated Mar 24, 2024Mar 24, 2024

• alphamissense

  Public
  Python

  •

  Apache License 2.0

  •69•0•0•0•Updated Mar 13, 2024Mar 13, 2024

• ProDESIGN-LE

  Public
  An accurate and efficient protein sequence design approach

  Python

  •4•22•0•0•Updated Dec 6, 2023Dec 6, 2023

• alphafold2

  Public
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

  Python

  •

  MIT License

  •260•1•0•0•Updated Aug 28, 2023Aug 28, 2023

• glyBranch

  Public
  Java

  •1•2•0•1•Updated Aug 23, 2023Aug 23, 2023

• HH-suite-database

  Public
  Shell

  •0•0•0•0•Updated Jun 11, 2023Jun 11, 2023

• QA-RESE

  Public
  Python

  •0•0•0•0•Updated Jun 28, 2021Jun 28, 2021

• ProFOLD

  Public
  A protein 3D structure prediction application

  Python

  •

  MIT License

  •15•1•0•0•Updated Mar 24, 2021Mar 24, 2021

• hhsuite2

  Public
  A fork for the old hhsuite-2.0.16

  C

  •

  Other

  •5•0•0•0•Updated Nov 27, 2020Nov 27, 2020

• ISSEC

  Public
  Inter-SSE contacts prediction

  Python

  •0•3•1•0•Updated Sep 11, 2020Sep 11, 2020

• PDB_Tool

  Public
  Extract structural features from original PDB file

  C++

  •

  GNU General Public License v3.0

  •12•0•0•0•Updated Jul 14, 2020Jul 14, 2020

• nanoGapFiller

  Public
  Python

  •1•0•1•0•Updated Feb 24, 2020Feb 24, 2020

• GIPS

  Public
  0•0•0•0•Updated Jan 6, 2020Jan 6, 2020

• PEARL

  Public
  C++

  •0•0•0•0•Updated May 12, 2019May 12, 2019

• nanoARCS3

  Public
  0•0•0•0•Updated Dec 10, 2018Dec 10, 2018

• nanoARCS

  Public
  C++

  •0•0•0•0•Updated Dec 10, 2018Dec 10, 2018

• gNovo

  Public
  Java

  •0•0•0•0•Updated Sep 11, 2018Sep 11, 2018

• DeepFR

  Public
  Improving Protein Fold Recognition by Extracting Fold-specific Features from Predicted Residue-residue Contacts

  Python

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Aug 10, 2017Aug 10, 2017

• ARCS

  Public
  ARCS is a second-generation genome assembler.

  C++

  •

  GNU General Public License v3.0

  •0•9•0•0•Updated Oct 8, 2016Oct 8, 2016