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@aomlomics AOML 'Omics

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    20 repositories

    • tourmaline

      Public
      Amplicon sequence processing workflow using QIIME 2 and Snakemake
      noaa-omics-softwaresnakemakedada2debluramplicon-sequence-variants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•45•42•0•Updated Dec 23, 2024Dec 23, 2024

    • opal

      Public
      TypeScript
      •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

    • mitohelper

      Public
      Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
      ednanoaa-omics-softwaremitofishmifishfish-edna-studies
      Python
      •8•18•0•0•Updated Dec 11, 2024Dec 11, 2024

    • protocols

      Public
      Protocols used by AOML Omics labs, following the BeBOP-OBON standard
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •2•1•5•0•Updated Dec 6, 2024Dec 6, 2024

    • seusmbon

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • labelmaker

      Public
      Printable QR labels for samples
      noaa-omics-softwaretexlabelmakerlabel-sheet
      Python
      •
      Other
      •8•7•1•0•Updated Sep 2, 2024Sep 2, 2024

    • gomecc

      Public
      Input files and data analysis for NOAA GOMECC-4 DNA project.
      noaa-omics-study
      HTML
      •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • sase

      Public
      C++
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 8, 2024May 8, 2024

    • tutorials

      Public
      Tutorials for data science and bioinformatics
      noaa-omics-education
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •5•10•1•0•Updated May 3, 2024May 3, 2024

    • edna2obis

      Public
      Code to convert eDNA metabarcoding data to Darwin Core for OBIS
      Jupyter Notebook
      •
      MIT License
      •2•5•4•0•Updated Apr 29, 2024Apr 29, 2024

    • amethyst

      Public
      Metagenomics analysis workflow
      Python
      •4•1•1•0•Updated Mar 11, 2024Mar 11, 2024

    • omics-data-management

      Public
      Previous guide to omics data management, including NOAA Omics Data Management Plan.
      noaa-datanoaa-omics-data
      GNU General Public License v3.0
      •1•7•3•0•Updated Jan 12, 2024Jan 12, 2024

    • datasets

      Public
      List of datasets generated by the AOML 'Omics program
      noaa-omics-data
      HTML
      •0•1•0•0•Updated Jan 9, 2024Jan 9, 2024

    • sedtrap

      Public
      Files associated with the USGS GoM Sediment Trap (GMT cruises)
      noaa-omics-study
      R
      •0•1•8•0•Updated Sep 7, 2023Sep 7, 2023

    • study-template

      Public template
      Create a new repository for each study using this template.
      noaa-omics-study
      R
      •0•0•0•0•Updated Aug 18, 2023Aug 18, 2023

    • cloud-classroom

      Public
      Guides for using commercial cloud resources
      2•1•1•0•Updated Aug 1, 2023Aug 1, 2023

    • sterivex

      Public
      Methods development for high-throughput eDNA sampling and extraction with Sterivex filters
      noaa-omics-study
      Jupyter Notebook
      •2•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • erie

      Public
      Study of cyanobacterial harmful algal blooms in Lake Erie using autonomous sampling and DNA sequencing
      metagenomicsamplicon-sequencingnoaa-omics-study
      HTML
      •1•1•0•0•Updated Jul 1, 2021Jul 1, 2021

    • roboboogie

      Public
      Protocols and labware specifications for the KingFisher Flex and Opentrons OT-2 robots
      kingfisheropentronsnoaa-omics-software
      Python
      •1•0•0•0•Updated Jun 1, 2021Jun 1, 2021

    • aomlomics.github.io

      Public
      Official GitHub organization of the AOML Omics program. AOML is a federal research laboratory of the National Oceanic and Atmospheric Administration (NOAA).
      HTML
      •0•2•0•0•Updated Mar 13, 2021Mar 13, 2021