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    20 repositories

    • GillesPy2

      Public
      Modeling toolkit for biochemical simulation
      Python
      •
      GNU General Public License v3.0
      •32•73•4•1•Updated Sep 19, 2024Sep 19, 2024

    • SpatialPy

      Public
      Simulation of spatial deterministic/stochastic reaction-diffusion-advection problems embedded in Lagrangian reference frame particle based fluid dynamics domain
      Python
      •
      GNU General Public License v3.0
      •4•17•29•8•Updated Aug 1, 2023Aug 1, 2023

    • stochss

      Public
      StochSS - Software as a Service for modeling, simulation, inference and analysis of biochemical models. https://live.stochss.org
      JavaScript
      •
      GNU General Public License v3.0
      •21•23•46•4•Updated May 24, 2023May 24, 2023

    • sciope

      Public
      Python3 Toolkit for ML-assisted inference, optimization and parameter exploration.
      Python
      •
      Other
      •11•15•6•1•Updated May 15, 2023May 15, 2023

    • stochss-compute

      Public
      A compute delegation server for the StochSS family of stochastic simulators.
      cloud-computingpython
      Python
      •
      GNU General Public License v3.0
      •0•5•5•4•Updated May 14, 2023May 14, 2023

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •5k•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • StochSS_Example_Library

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 2, 2023Mar 2, 2023

    • devils_dftd_modeling

      Public
      Modeling the population of Tasmanian devils and the prevalence of the DFTD disease in their population.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•11•0•Updated May 2, 2022May 2, 2022

    • StochSS_tutorial

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 1, 2021Mar 1, 2021

    • Covid19_Modeling

      Public
      Epidemiological modeling in StochSS
      softwarestochasticepidemiological-models
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 13, 2021Jan 13, 2021

    • model-exploration-mvp

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 26, 2020Oct 26, 2020

    • GillesPy2lia

      Public
      Use GillesPy2 in Julia
      Julia
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jul 30, 2020Jul 30, 2020

    • StochKit

      Public
      StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
      C++
      •
      GNU General Public License v3.0
      •5•16•0•0•Updated Jun 9, 2020Jun 9, 2020

    • dask-tests

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2019Sep 16, 2019

    • jetstream_kubespray

      Public
      Setup a kubernetes cluster
      Python
      •
      Apache License 2.0
      •6.5k•0•0•0•Updated Jun 14, 2019Jun 14, 2019

    • tutorials

      Public
      TeX
      •1•2•3•1•Updated Mar 15, 2017Mar 15, 2017

    • StochKit_ode

      Public
      StochKit compatible ode solver, part of the StochSS project
      C++
      •0•1•0•0•Updated Sep 11, 2016Sep 11, 2016

    • register

      Public
      Registration server
      Python
      •0•0•1•0•Updated Mar 2, 2016Mar 2, 2016

    • ampersand-select-view

      Public
      Select field for ampersand-form-views
      JavaScript
      •
      MIT License
      •26•0•0•0•Updated May 21, 2015May 21, 2015

    • ampersand-form-view

      Public
      Completely customizable form lib for bulletproof clientside forms.
      JavaScript
      •
      MIT License
      •20•0•0•0•Updated Jan 19, 2015Jan 19, 2015