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@SexChrLab Sex Chromosome Lab

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    49 repositories

    • SexChrCoordinates

      Public
      Coordinates for genomic features on human X and Y chromosomes.
      0•1•0•0•Updated Dec 29, 2024Dec 29, 2024

    • CCLE_SexChr

      Public
      Identifying sex chromosome complement in cancer cell line encyclopedia (CCLE) samples
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • SexInference

      Public
      Infer sex from DNA sequencing data and RNA sequencing data
      R
      •
      GNU General Public License v3.0
      •1•4•2•0•Updated Oct 7, 2024Oct 7, 2024

    • Snails

      Public
      0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • ComparativePlacenta

      Public
      The Unlicense
      •0•0•0•0•Updated Aug 10, 2024Aug 10, 2024

    • Viral_HCC_Sex_Diff

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

    • CURES

      Public
      Course based research experiences
      Shell
      •0•1•0•0•Updated Jul 20, 2024Jul 20, 2024

    • MOSAIC_GBM_Imaging_Omics

      Public
      Python
      •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • Genomics_CURE

      Public
      Shell
      •
      GNU General Public License v3.0
      •2•1•0•1•Updated Apr 12, 2024Apr 12, 2024

    • CancerSexCheck

      Public
      Identifying sex chromosome complement in cancers.
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 14, 2024Feb 14, 2024

    • Cancer_Genomics

      Public
      Assembling pipelines for our cancer genomics work. This includes neoepitope identification, and sex difference analyses.
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Jul 10, 2023Jul 10, 2023

    • RodentAddiction

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated May 22, 2023May 22, 2023

    • VariantCalling

      Public
      Investigating the effects of different parameters on variant calling genome-wide (A, X, Y, mtDNA)
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 11, 2023May 11, 2023

    • Vannan-Dissertation-Supplements

      Public
      0•0•0•0•Updated May 3, 2022May 3, 2022

    • Placenta_Sex_Diff

      Public
      Sex differences in full term uncomplicated human placentas
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 25, 2022Apr 25, 2022

    • BioinformaticsIntroduction

      Public
      Tutorials to get started in bioinformatics
      GNU General Public License v3.0
      •6•26•0•0•Updated Apr 19, 2022Apr 19, 2022

    • Placenta_XCI

      Public
      Understanding patterns of X chromosome inactivation in full term human placenta
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 8, 2022Apr 8, 2022

    • T2T_ChromosomeY

      Public
      Code for the analyses included in the T2T chromosome Y paper
      0•0•0•0•Updated Mar 22, 2022Mar 22, 2022

    • XY_RNAseq

      Public
      R
      •
      GNU General Public License v3.0
      •5•8•0•0•Updated Jan 8, 2022Jan 8, 2022

    • Cancer_CURE

      Public
      Cancer genomics course-based undergraduate research
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 28, 2021Dec 28, 2021

    • Kenya_Fst

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 3, 2021Oct 3, 2021

    • TE_expression

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2021Jun 9, 2021

    • CurrentLabPractices

      Public
      This is where we will update our current genomics and statistical approaches.
      GNU General Public License v3.0
      •0•0•0•0•Updated May 17, 2021May 17, 2021

    • Nasonia

      Public
      Parent and species of origin ASE
      R
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated May 3, 2021May 3, 2021

    • Mayo_breast_regional_heterogeneity

      Public
      Multiregional sampling analysis
      Python
      •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021

    • Introgression_Cancer

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 2, 2021Apr 2, 2021

    • HCC_Immunity

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 22, 2021Mar 22, 2021

    • PopInf

      Public
      Quick inference of population history
      R
      •1•0•0•0•Updated Jan 21, 2021Jan 21, 2021

    • Cayo_X_inactivation

      Public
      HTML
      •0•0•0•0•Updated Jan 4, 2021Jan 4, 2021

    • GTEx_Brains

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 12, 2020Nov 12, 2020