Repositories list

• pattyfam_compute

  Public
  PATRIC family compute code

  Perl

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• p3_auth

  Public
  authentication

  Perl

  •

  MIT License

  •4•1•0•0•Updated Jun 18, 2024Jun 18, 2024

• rast_server

  Public
  RAST server code

  Makefile

  •1•0•0•0•Updated Jul 19, 2023Jul 19, 2023

• mauve-viewer

  Public
  A Whole Genome Alignment Visualization Tool for the Web

  JavaScript

  •

  MIT License

  •5•44•4•6•Updated Apr 29, 2023Apr 29, 2023

• bootstrap

  Public
  Perl

  •

  MIT License

  •14•1•0•0•Updated Feb 6, 2023Feb 6, 2023

• p3-ui-prototype

  Public
  TypeScript

  •

  MIT License

  •1•1•0•13•Updated Jan 6, 2023Jan 6, 2023

• p3-ui-test

  Public
  HTML

  •

  MIT License

  •1•0•0•15•Updated Jan 6, 2023Jan 6, 2023

• PATRIC-distribution

  Public
  For distributing patric related code

  HTML

  •4•27•18•0•Updated Dec 19, 2022Dec 19, 2022

• p3_rnaseq

  Public
  PATRIC RNAseq application

  Perl

  •1•0•0•0•Updated Dec 1, 2022Dec 1, 2022

• p3_docs

  Public
  This repository is for manage PATRIC static contents such as Website Tutorial, CLI Tutorial, User Guides, and PATRIC eNews.

  hacktoberfest

  Python

  •20•4•0•0•Updated Nov 9, 2022Nov 9, 2022

• p3_web

  Public
  JavaScript

  •

  MIT License

  •17•3•4•0•Updated Nov 1, 2022Nov 1, 2022

• solrjs

  Public
  Simple NodeJS Solr Client

  JavaScript

  •2•0•0•0•Updated Aug 26, 2021Aug 26, 2021

• hotmap

  Public
  WebGL Heatmap Viewer for Big Data and Bioinformatics

  JavaScript

  •

  MIT License

  •5•0•0•0•Updated Jan 5, 2021Jan 5, 2021

• p3_module_template

  Public template
  Template repository for PATRIC release engineered modules.

  Makefile

  •0•0•0•0•Updated Dec 16, 2020Dec 16, 2020

• image_build

  Public
  Image maintenance stuff for PATRIC3

  Shell

  •0•0•0•0•Updated May 21, 2020May 21, 2020

• bamclipper

  Public
  Remove primer sequence from BAM alignments by soft-clipping

  Perl

  •

  MIT License

  •10•0•0•0•Updated May 19, 2020May 19, 2020

• logos

  Public
  a repository of logos

  PostScript

  •0•0•0•0•Updated Apr 21, 2020Apr 21, 2020

• freebayes

  Public
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  C++

  •

  MIT License

  •265•0•0•0•Updated Dec 17, 2019Dec 17, 2019

• mic_prediction

  Public
  Code for doing MIC predictions on genomes

  Python

  •3•36•0•0•Updated Dec 5, 2019Dec 5, 2019

• containers

  Public
  Specifications for PATRIC container builds

  0•0•0•0•Updated Sep 4, 2019Sep 4, 2019

• procedures

  Public
  Contains documented procedures for things operational

  2•1•0•0•Updated Jul 12, 2019Jul 12, 2019

• p3_deployment

  Public
  Perl

  •0•0•0•0•Updated Jun 21, 2019Jun 21, 2019

• homology_service

  Public
  Perl

  •

  MIT License

  •0•0•0•0•Updated Jun 21, 2019Jun 21, 2019

• patric_solr

  Public archive
  manages PATRIC Solr schema

  Shell

  •

  MIT License

  •2•5•0•0•Updated Apr 8, 2019Apr 8, 2019

• app_service

  Public
  Application execution service.

  Perl

  •17•0•0•0•Updated Apr 5, 2019Apr 5, 2019

• p3_read_mapping

  Public
  Repo for PATRIC read mapping tools

  0•0•0•0•Updated Mar 5, 2019Mar 5, 2019

• mauve_viewer

  Public
  0•0•0•0•Updated Sep 10, 2018Sep 10, 2018

• p3_user_service

  Public
  Makefile

  •2•0•0•0•Updated Jul 12, 2018Jul 12, 2018

• pepr

  Public
  Phylogenomic Estimation with progressive Refinement

  Java

  •2•0•0•1•Updated Dec 19, 2017Dec 19, 2017

• p3_solr

  Public archive
  contains modified solr code plus plugins

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 4, 2017Nov 4, 2017