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@Dfam-consortium Dfam Consortium

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    18 repositories

    • FamDB

      Public
      FamDB file format library and utilities
      Python
      •1•18•1•0•Updated Jan 4, 2025Jan 4, 2025

    • Dfam-API

      Public
      Dfam API server
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Jan 4, 2025Jan 4, 2025

    • DisCoord

      Public
      A tool for validating and fixing sequence coordinates in FASTA or Stockholm files
      Rust
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • Dfam-Portal

      Public
      Angular website for Dfam resource
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •1•1•1•0•Updated Dec 12, 2024Dec 12, 2024

    • AlignmentSummaryViewer

      Public
      Multiple sequence alignment visualization component
      HTML
      •0•4•0•0•Updated Dec 12, 2024Dec 12, 2024

    • Smitten

      Public
      A format for sequence identifiers and reference parsing implementations
      Perl
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • RepeatMasker_Nextflow

      Public
      Nextflow script for running RepeatMasker on a cluster
      Perl
      •0•5•3•0•Updated Dec 6, 2024Dec 6, 2024

    • TETools

      Public
      Dfam Transposable Element Tools Docker container.
      Perl
      •
      Creative Commons Zero v1.0 Universal
      •17•86•1•0•Updated Nov 26, 2024Nov 26, 2024

    • RepeatScout

      Public
      An algorithm for the de novo identification of repeat families.
      C
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • RepeatModeler

      Public
      De-Novo Repeat Discovery Tool
      Perl
      •
      Other
      •22•197•105•1•Updated Nov 26, 2024Nov 26, 2024

    • RepeatMasker

      Public
      RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
      Perl
      •
      Other
      •50•238•17•4•Updated Nov 6, 2024Nov 6, 2024

    • RepeatAfterMe

      Public
      A package for the extension of repetitive DNA sequences
      C
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Oct 17, 2024Oct 17, 2024

    • tss_prefilter

      Public
      Tensor Slide Sketch Alignment Prefilter
      Rust
      •0•1•0•0•Updated Sep 16, 2024Sep 16, 2024

    • polyA

      Public
      Automatically Adjudicate Any And All Arbitrary Annotations, Astutely Adjoin Abutting Alignments, And Also Amputate Anything Amiss (AAAAAAAAAAAAAAAA)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • dfam-boilerplate

      Public
      Boilerplate, templates and standards for various languages and platforms utilized by Dfam
      Python
      •0•0•0•0•Updated Aug 30, 2022Aug 30, 2022

    • TEForwardEvolve

      Public
      Perl
      •0•1•0•0•Updated Nov 3, 2021Nov 3, 2021

    • Karyotype

      Public
      Dfam Karyotype Visualization
      HTML
      •0•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • Dfam-js

      Public
      Dfam/Dfam_consensus javascript library
      JavaScript
      •0•1•0•0•Updated Dec 14, 2018Dec 14, 2018