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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.6"
"version": "3.11.7"
}
},
"nbformat": 4,
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.6"
"version": "3.11.7"
}
},
"nbformat": 4,
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18 changes: 9 additions & 9 deletions otagrum/master/_sources/auto_examples/plot_plant_growth.rst.txt
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Expand Up @@ -159,7 +159,7 @@ light has 2 attributes : Dim and Bright
.. code-block:: none
(pyAgrum.LabelizedVariable@0x5626f5b749a0) Light:Labelized({Dim|Bright})
(pyAgrum.LabelizedVariable@0x5607db35f0b0) Light:Labelized({Dim|Bright})
Expand All @@ -183,7 +183,7 @@ moisture has 2 attributes : Dry and Wet
.. code-block:: none
(pyAgrum.LabelizedVariable@0x5626f5a1bd10) Moisture:Labelized({Dry|Wet})
(pyAgrum.LabelizedVariable@0x5607db2bb870) Moisture:Labelized({Dry|Wet})
Expand Down Expand Up @@ -274,7 +274,7 @@ Add arcs
.. code-block:: none
(pyAgrum.BayesNet<double>@0x5626f8ebf3d0) BN{nodes: 3, arcs: 3, domainSize: 56, dim: 55, mem: 496o}
(pyAgrum.BayesNet<double>@0x5607de3021b0) BN{nodes: 3, arcs: 3, domainSize: 56, dim: 55, mem: 496o}
Expand Down Expand Up @@ -307,7 +307,7 @@ light conditional probability table

.. code-block:: none
/usr/lib/python3.11/site-packages/pyAgrum/lib/notebook.py:1743: UserWarning:
/usr/lib/python3.11/site-packages/pyAgrum/lib/notebook.py:1744: UserWarning:
** pyAgrum.lib.notebook has to be imported from an IPython's instance (mainly notebook).
warnings.warn("""
Expand Down Expand Up @@ -468,7 +468,7 @@ Variability of the plant growth on my balcony
Probability (height > 40cm) = 0.32857134257593257
<openturns.viewer.View object at 0x7fe56fb75110>
<openturns.viewer.View object at 0x7f626c705710>
Expand Down Expand Up @@ -515,7 +515,7 @@ Variability of the plant growth in my cellar
Probability (height > 40cm)|Light=Dim = 0.11428571428571432
<openturns.viewer.View object at 0x7fe55d8df850>
<openturns.viewer.View object at 0x7f6264708750>
Expand Down Expand Up @@ -562,7 +562,7 @@ Variability of the plant growth when the atmosphere is very wet
Probability (height > 40cm)|Moisture=Wet = 0.6571426851518651
<openturns.viewer.View object at 0x7fe5581b47d0>
<openturns.viewer.View object at 0x7f62759fcb90>
Expand Down Expand Up @@ -593,7 +593,7 @@ Get the distribution of the variable "Light"
UserDefined({x = [0], p = 0.4}, {x = [1], p = 0.6})
<openturns.viewer.View object at 0x7fe5581c8190>
<openturns.viewer.View object at 0x7f626c711190>
Expand Down Expand Up @@ -629,7 +629,7 @@ Get the joint distribution [H, M]
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.440 seconds)
**Total running time of the script:** (0 minutes 0.446 seconds)


.. _sphx_glr_download_auto_examples_plot_plant_growth.py:
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12 changes: 6 additions & 6 deletions otagrum/master/_sources/auto_examples/plot_using_otagrum.rst.txt
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Expand Up @@ -139,7 +139,7 @@ To do so, we need a NamedDAG structure...
.. code-block:: none
(pyAgrum.DAG@0x7fe54c088aa0) {0,1,2,3} , {2->3,0->2,1->2}
(pyAgrum.DAG@0x5607ddf4d4e0) {0,1,2,3} , {2->3,0->2,1->2}
Expand Down Expand Up @@ -293,7 +293,7 @@ We first learn the skeleton, that is the undirected structure.
.. code-block:: none
(pyAgrum.UndiGraph@0x5626f87fd380) {0,1,2,3} , {2--3,0--2,1--2}
(pyAgrum.UndiGraph@0x5607ddec4ef0) {0,1,2,3} , {2--3,0--2,1--2}
Expand Down Expand Up @@ -330,7 +330,7 @@ Then we look for the v-structures, leading to a Partially Directed Acyclic Graph
.. code-block:: none
(pyAgrum.MixedGraph@0x5626f858d730) {0,1,2,3} , {1->2,0->2} , {2--3}
(pyAgrum.MixedGraph@0x5607de353070) {0,1,2,3} , {1->2,0->2} , {2--3}
Expand Down Expand Up @@ -460,7 +460,7 @@ As with PC algorithm we can learn the skeleton, PDAG and DAG using
.. code-block:: none
(pyAgrum.UndiGraph@0x5626f87b89d0) {0,1,2,3} , {2--3,0--2,1--2}
(pyAgrum.UndiGraph@0x5607ddf202d0) {0,1,2,3} , {2--3,0--2,1--2}
Expand Down Expand Up @@ -494,7 +494,7 @@ As with PC algorithm we can learn the skeleton, PDAG and DAG using
.. code-block:: none
(pyAgrum.MixedGraph@0x5626f8581040) {0,1,2,3} , {2->3,1->2,0->2} , {}
(pyAgrum.MixedGraph@0x5607dd8c7580) {0,1,2,3} , {2->3,1->2,0->2} , {}
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.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.215 seconds)
**Total running time of the script:** (0 minutes 0.211 seconds)


.. _sphx_glr_download_auto_examples_plot_using_otagrum.py:
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Computation times
=================
**00:00.655** total execution time for 2 files **from auto_examples**:
**00:00.658** total execution time for 2 files **from auto_examples**:

.. container::

Expand All @@ -33,8 +33,8 @@ Computation times
- Time
- Mem (MB)
* - :ref:`sphx_glr_auto_examples_plot_plant_growth.py` (``plot_plant_growth.py``)
- 00:00.440
- 00:00.446
- 0.0
* - :ref:`sphx_glr_auto_examples_plot_using_otagrum.py` (``plot_using_otagrum.py``)
- 00:00.215
- 00:00.211
- 0.0
6 changes: 3 additions & 3 deletions otagrum/master/_sources/sg_execution_times.rst.txt
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Expand Up @@ -6,7 +6,7 @@

Computation times
=================
**00:00.655** total execution time for 2 files **from all galleries**:
**00:00.658** total execution time for 2 files **from all galleries**:

.. container::

Expand All @@ -33,8 +33,8 @@ Computation times
- Time
- Mem (MB)
* - :ref:`sphx_glr_auto_examples_plot_plant_growth.py` (``examples/plot_plant_growth.py``)
- 00:00.440
- 00:00.446
- 0.0
* - :ref:`sphx_glr_auto_examples_plot_using_otagrum.py` (``examples/plot_using_otagrum.py``)
- 00:00.215
- 00:00.211
- 0.0
18 changes: 9 additions & 9 deletions otagrum/master/auto_examples/plot_plant_growth.html
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Expand Up @@ -139,15 +139,15 @@ <h3>Navigation</h3>
<span class="n">light</span><span class="o">.</span><span class="n">addLabel</span><span class="p">(</span><span class="s2">&quot;Bright&quot;</span><span class="p">)</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.LabelizedVariable@0x5626f5b749a0) Light:Labelized({Dim|Bright})
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.LabelizedVariable@0x5607db35f0b0) Light:Labelized({Dim|Bright})
</pre></div>
</div>
<p>moisture has 2 attributes : Dry and Wet</p>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">moisture</span><span class="o">.</span><span class="n">addLabel</span><span class="p">(</span><span class="s2">&quot;Dry&quot;</span><span class="p">)</span>
<span class="n">moisture</span><span class="o">.</span><span class="n">addLabel</span><span class="p">(</span><span class="s2">&quot;Wet&quot;</span><span class="p">)</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.LabelizedVariable@0x5626f5a1bd10) Moisture:Labelized({Dry|Wet})
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.LabelizedVariable@0x5607db2bb870) Moisture:Labelized({Dry|Wet})
</pre></div>
</div>
<p>height is a discretized variable</p>
Expand Down Expand Up @@ -177,7 +177,7 @@ <h3>Navigation</h3>
<span class="n">bn</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.BayesNet&lt;double&gt;@0x5626f8ebf3d0) BN{nodes: 3, arcs: 3, domainSize: 56, dim: 55, mem: 496o}
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.BayesNet&lt;double&gt;@0x5607de3021b0) BN{nodes: 3, arcs: 3, domainSize: 56, dim: 55, mem: 496o}
</pre></div>
</div>
<p>The next step is the quantification of the Bayes net.</p>
Expand All @@ -194,7 +194,7 @@ <h3>Navigation</h3>
<span class="n">showPotential</span><span class="p">(</span><span class="n">bn</span><span class="o">.</span><span class="n">cpt</span><span class="p">(</span><span class="n">indexLight</span><span class="p">))</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/usr/lib/python3.11/site-packages/pyAgrum/lib/notebook.py:1743: UserWarning:
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/usr/lib/python3.11/site-packages/pyAgrum/lib/notebook.py:1744: UserWarning:
** pyAgrum.lib.notebook has to be imported from an IPython&#39;s instance (mainly notebook).

warnings.warn(&quot;&quot;&quot;
Expand Down Expand Up @@ -287,7 +287,7 @@ <h3>Navigation</h3>
</div>
<img src="../_images/sphx_glr_plot_plant_growth_001.png" srcset="../_images/sphx_glr_plot_plant_growth_001.png" alt="Height PDF" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Probability (height &gt; 40cm) = 0.32857134257593257

&lt;openturns.viewer.View object at 0x7fe56fb75110&gt;
&lt;openturns.viewer.View object at 0x7f626c705710&gt;
</pre></div>
</div>
<p>Variability of the plant growth in my cellar</p>
Expand All @@ -303,7 +303,7 @@ <h3>Navigation</h3>
</div>
<img src="../_images/sphx_glr_plot_plant_growth_002.png" srcset="../_images/sphx_glr_plot_plant_growth_002.png" alt="Height|Light=Dim PDF" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Probability (height &gt; 40cm)|Light=Dim = 0.11428571428571432

&lt;openturns.viewer.View object at 0x7fe55d8df850&gt;
&lt;openturns.viewer.View object at 0x7f6264708750&gt;
</pre></div>
</div>
<p>Variability of the plant growth when the atmosphere is very wet</p>
Expand All @@ -319,7 +319,7 @@ <h3>Navigation</h3>
</div>
<img src="../_images/sphx_glr_plot_plant_growth_003.png" srcset="../_images/sphx_glr_plot_plant_growth_003.png" alt="Height|Moisture=Wet PDF" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Probability (height &gt; 40cm)|Moisture=Wet = 0.6571426851518651

&lt;openturns.viewer.View object at 0x7fe5581b47d0&gt;
&lt;openturns.viewer.View object at 0x7f62759fcb90&gt;
</pre></div>
</div>
<p>Get the distribution of the variable “Light”</p>
Expand All @@ -330,7 +330,7 @@ <h3>Navigation</h3>
</div>
<img src="../_images/sphx_glr_plot_plant_growth_004.png" srcset="../_images/sphx_glr_plot_plant_growth_004.png" alt="Light PDF" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>UserDefined({x = [0], p = 0.4}, {x = [1], p = 0.6})

&lt;openturns.viewer.View object at 0x7fe5581c8190&gt;
&lt;openturns.viewer.View object at 0x7f626c711190&gt;
</pre></div>
</div>
<p>Get the joint distribution [H, M]</p>
Expand All @@ -347,7 +347,7 @@ <h3>Navigation</h3>
UserDefined({x = [0], p = 0.5}, {x = [1], p = 0.5})
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.440 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.446 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-plot-plant-growth-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../_downloads/a1db101856b791da0196ee9f109a8220/plot_plant_growth.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_plant_growth.ipynb</span></code></a></p>
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12 changes: 6 additions & 6 deletions otagrum/master/auto_examples/plot_using_otagrum.html
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Expand Up @@ -97,7 +97,7 @@ <h3>Navigation</h3>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">dag</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.DAG@0x7fe54c088aa0) {0,1,2,3} , {2-&gt;3,0-&gt;2,1-&gt;2}
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.DAG@0x5607ddf4d4e0) {0,1,2,3} , {2-&gt;3,0-&gt;2,1-&gt;2}
</pre></div>
</div>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">structure</span> <span class="o">=</span> <span class="n">otagrum</span><span class="o">.</span><span class="n">NamedDAG</span><span class="p">(</span><span class="n">dag</span><span class="p">,</span> <span class="nb">list</span><span class="p">(</span><span class="n">mapping</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
Expand Down Expand Up @@ -145,7 +145,7 @@ <h3>Navigation</h3>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">skeleton</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.UndiGraph@0x5626f87fd380) {0,1,2,3} , {2--3,0--2,1--2}
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.UndiGraph@0x5607ddec4ef0) {0,1,2,3} , {2--3,0--2,1--2}
</pre></div>
</div>
<p>Then we look for the v-structures, leading to a Partially Directed Acyclic Graph (PDAG)</p>
Expand All @@ -155,7 +155,7 @@ <h3>Navigation</h3>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">pdag</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.MixedGraph@0x5626f858d730) {0,1,2,3} , {1-&gt;2,0-&gt;2} , {2--3}
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.MixedGraph@0x5607de353070) {0,1,2,3} , {1-&gt;2,0-&gt;2} , {2--3}
</pre></div>
</div>
<p>Finally, the remaining edges are oriented by propagating constraints</p>
Expand Down Expand Up @@ -201,7 +201,7 @@ <h3>Navigation</h3>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">skeleton</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.UndiGraph@0x5626f87b89d0) {0,1,2,3} , {2--3,0--2,1--2}
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.UndiGraph@0x5607ddf202d0) {0,1,2,3} , {2--3,0--2,1--2}
</pre></div>
</div>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">pdag</span> <span class="o">=</span> <span class="n">learner</span><span class="o">.</span><span class="n">learnPDAG</span><span class="p">()</span>
Expand All @@ -210,7 +210,7 @@ <h3>Navigation</h3>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">pdag</span>
</pre></div>
</div>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.MixedGraph@0x5626f8581040) {0,1,2,3} , {2-&gt;3,1-&gt;2,0-&gt;2} , {}
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>(pyAgrum.MixedGraph@0x5607dd8c7580) {0,1,2,3} , {2-&gt;3,1-&gt;2,0-&gt;2} , {}
</pre></div>
</div>
<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">dag</span> <span class="o">=</span> <span class="n">learner</span><span class="o">.</span><span class="n">learnDAG</span><span class="p">()</span>
Expand Down Expand Up @@ -267,7 +267,7 @@ <h3>Navigation</h3>
<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>0.15241697100666607
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.215 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.211 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-plot-using-otagrum-py">
<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
<p><a class="reference download internal" download="" href="../_downloads/5d5ea88ebb95e0f402b04a4daf048e90/plot_using_otagrum.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_using_otagrum.ipynb</span></code></a></p>
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6 changes: 3 additions & 3 deletions otagrum/master/auto_examples/sg_execution_times.html
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Expand Up @@ -40,7 +40,7 @@ <h3>Navigation</h3>

<section id="computation-times">
<span id="sphx-glr-auto-examples-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading"></a></h1>
<p><strong>00:00.655</strong> total execution time for 2 files <strong>from auto_examples</strong>:</p>
<p><strong>00:00.658</strong> total execution time for 2 files <strong>from auto_examples</strong>:</p>
<div class="docutils container">
<style scoped>
<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
Expand All @@ -62,11 +62,11 @@ <h3>Navigation</h3>
</thead>
<tbody>
<tr class="row-even"><td><p><a class="reference internal" href="plot_plant_growth.html#sphx-glr-auto-examples-plot-plant-growth-py"><span class="std std-ref">Plant growth</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_plant_growth.py</span></code>)</p></td>
<td><p>00:00.440</p></td>
<td><p>00:00.446</p></td>
<td><p>0.0</p></td>
</tr>
<tr class="row-odd"><td><p><a class="reference internal" href="plot_using_otagrum.html#sphx-glr-auto-examples-plot-using-otagrum-py"><span class="std std-ref">Using otagrum</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_using_otagrum.py</span></code>)</p></td>
<td><p>00:00.215</p></td>
<td><p>00:00.211</p></td>
<td><p>0.0</p></td>
</tr>
</tbody>
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2 changes: 1 addition & 1 deletion otagrum/master/genindex.html
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Expand Up @@ -1385,7 +1385,7 @@ <h3>Navigation</h3>
</div>
<div class="footer" role="contentinfo">
&#169; Copyright 2022, Airbus-EDF-IMACS-Phimeca.
Last updated on Jan 15, 2024.
Last updated on Feb 14, 2024.
Created using <a href="https://www.sphinx-doc.org/">Sphinx</a> 7.2.6.
</div>
</body>
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2 changes: 1 addition & 1 deletion otagrum/master/search.html
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Expand Up @@ -95,7 +95,7 @@ <h3>Navigation</h3>
</div>
<div class="footer" role="contentinfo">
&#169; Copyright 2022, Airbus-EDF-IMACS-Phimeca.
Last updated on Jan 15, 2024.
Last updated on Feb 14, 2024.
Created using <a href="https://www.sphinx-doc.org/">Sphinx</a> 7.2.6.
</div>
</body>
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2 changes: 1 addition & 1 deletion otagrum/master/searchindex.js

Large diffs are not rendered by default.

6 changes: 3 additions & 3 deletions otagrum/master/sg_execution_times.html
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Expand Up @@ -40,7 +40,7 @@ <h3>Navigation</h3>

<section id="computation-times">
<span id="sphx-glr-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading"></a></h1>
<p><strong>00:00.655</strong> total execution time for 2 files <strong>from all galleries</strong>:</p>
<p><strong>00:00.658</strong> total execution time for 2 files <strong>from all galleries</strong>:</p>
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Expand All @@ -62,11 +62,11 @@ <h3>Navigation</h3>
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<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/plot_plant_growth.html#sphx-glr-auto-examples-plot-plant-growth-py"><span class="std std-ref">Plant growth</span></a> (<code class="docutils literal notranslate"><span class="pre">examples/plot_plant_growth.py</span></code>)</p></td>
<td><p>00:00.440</p></td>
<td><p>00:00.446</p></td>
<td><p>0.0</p></td>
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<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/plot_using_otagrum.html#sphx-glr-auto-examples-plot-using-otagrum-py"><span class="std std-ref">Using otagrum</span></a> (<code class="docutils literal notranslate"><span class="pre">examples/plot_using_otagrum.py</span></code>)</p></td>
<td><p>00:00.215</p></td>
<td><p>00:00.211</p></td>
<td><p>0.0</p></td>
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