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This copies the updated dockerfile from the research-template repo (see this [PR](opensafely/research-template#120)).
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FROM rocker/rstudio:4.0.5 | ||
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LABEL org.opencontainers.image.source https://github.com/opensafely/research-template | ||
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# we are going to use an apt cache on the host, so disable the default debian | ||
# docker clean up that deletes that cache on every apt install | ||
RUN rm -f /etc/apt/apt.conf.d/docker-clean | ||
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# Install python 3.10. This is the version used by the python-docker | ||
# image, used for analyses using the OpenSAFELY pipeline. | ||
RUN --mount=type=cache,target=/var/cache/apt \ | ||
Check failure on line 11 in Dockerfile GitHub Actions / lint-dockerfile
Check failure on line 11 in Dockerfile GitHub Actions / lint-dockerfile
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echo "deb http://ppa.launchpadcontent.net/deadsnakes/ppa/ubuntu focal main" > /etc/apt/sources.list.d/deadsnakes-ppa.list &&\ | ||
/usr/lib/apt/apt-helper download-file 'https://keyserver.ubuntu.com/pks/lookup?op=get&search=0xf23c5a6cf475977595c89f51ba6932366a755776' /etc/apt/trusted.gpg.d/deadsnakes.asc &&\ | ||
apt update &&\ | ||
apt install -y curl python3.10 python3.10-distutils python3.10-venv &&\ | ||
# Pip for Python 3.10 isn't included in deadsnakes, so install separately | ||
curl https://bootstrap.pypa.io/get-pip.py | python3.10 &&\ | ||
# Set default python, so that the Python virtualenv works as expected | ||
rm /usr/bin/python3 && ln -s /usr/bin/python3.10 /usr/bin/python3 | ||
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# install renv | ||
RUN --mount=type=cache,target=/cache,id=/cache-2004 R -e 'install.packages("renv", destdir="/cache"); renv::init(bare = TRUE)' | ||
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# copy the renv directory from the OpenSAFELY R action image | ||
COPY --from=ghcr.io/opensafely-core/r /renv/ /renv/ | ||
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# Copy the Python virtualenv from OpenSAFELY Python action image | ||
COPY --from=ghcr.io/opensafely-core/python:v2 /opt/venv /opt/venv | ||
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# Create a local user and give it sudo (aka root) permissions | ||
RUN usermod -aG sudo rstudio | ||
RUN echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers | ||
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# Required for installing opensafely cli | ||
ENV PATH="/home/rstudio/.local/bin:${PATH}" | ||
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USER rstudio |
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