add nf_tower test

src/common/workflows/transform_meta/run_nf_tower_test.sh

@@ -0,0 +1,38 @@
+#!/bin/bash
+
+DATASETS_DIR="s3://openproblems-nextflow/output/v2/batch_integration"
+
+# try running on nf tower
+cat > /tmp/params.yaml << HERE
+id: batch_integration_transform
+input_scores: "$DATASETS_DIR/output.run_benchmark.output_scores.yaml"
+input_dataset_info: "$DATASETS_DIR/output.run_benchmark.output_dataset_info.yaml"
+input_method_configs: "$DATASETS_DIR/output.run_benchmark.output_method_configs.yaml"
+input_metric_configs: "$DATASETS_DIR/output.run_benchmark.output_metric_configs.yaml"
+input_execution: "$DATASETS_DIR/trace.txt"
+input_task_info: "$DATASETS_DIR/output.run_benchmark.task_info.yaml"
+task_id: "batch_integration" 
+output_scores: "results.json"
+output_method_info: "method_info.json"
+output_metric_info: "metric_info.json"
+output_dataset_info: "dataset_info.json"
+output_task_info: "task_info.json"
+publish_dir: $DATASETS_DIR
+HERE
+
+cat > /tmp/nextflow.config << HERE
+process {
+  executor = 'awsbatch'
+}
+
+
+HERE
+
+tw launch https://github.com/openproblems-bio/openproblems-v2.git \
+  --revision integration_build \
+  --pull-latest \
+  --main-script target/nextflow/common/workflows/transform_meta/main.nf \
+  --workspace 53907369739130 \
+  --compute-env 7IkB9ckC81O0dgNemcPJTD \
+  --params-file /tmp/params.yaml \
+  --config /tmp/nextflow.config