Add spatially variable genes task #3901

Run time

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Job	Run time
run_ci_check_job	3s
list	4m 27s
viash_test (datasets/processors/subsample, /home/runner/work/openproblems-v2/openproblems-v2/src/...	1m 40s
viash_test (datasets/processors/hvg, /home/runner/work/openproblems-v2/openproblems-v2/src/datase...	2m 21s
viash_test (datasets/processors/svd, /home/runner/work/openproblems-v2/openproblems-v2/src/datase...	1m 36s
viash_test (datasets/processors/knn, /home/runner/work/openproblems-v2/openproblems-v2/src/datase...	2m 18s
viash_test (datasets/processors/pca, /home/runner/work/openproblems-v2/openproblems-v2/src/datase...	1m 19s
viash_test (datasets/loaders/zenodo_spatial_slidetags, /home/runner/work/openproblems-v2/openprob...	2m 49s
viash_test (datasets/loaders/tenx_visium, /home/runner/work/openproblems-v2/openproblems-v2/src/d...	3m 12s
viash_test (datasets/loaders/zenodo_spatial, /home/runner/work/openproblems-v2/openproblems-v2/sr...	2m 20s
viash_test (datasets/normalization/prot_clr, /home/runner/work/openproblems-v2/openproblems-v2/sr...	2m 6s
viash_test (datasets/normalization/log_cp, /home/runner/work/openproblems-v2/openproblems-v2/src/...	2m 3s
viash_test (datasets/normalization/sqrt_cp, /home/runner/work/openproblems-v2/openproblems-v2/src...	1m 53s
viash_test (datasets/normalization/l1_sqrt, /home/runner/work/openproblems-v2/openproblems-v2/src...	1m 20s
viash_test (datasets/normalization/atac_tfidf, /home/runner/work/openproblems-v2/openproblems-v2/...	2m 24s
viash_test (datasets/normalization/log_scran_pooling, /home/runner/work/openproblems-v2/openprobl...	2m 44s
viash_test (common/create_component, /home/runner/work/openproblems-v2/openproblems-v2/src/common...	1m 18s
viash_test (common/process_task_results/get_metric_info, /home/runner/work/openproblems-v2/openpr...	2m 11s
viash_test (common/process_task_results/get_method_info, /home/runner/work/openproblems-v2/openpr...	1m 22s
viash_test (common/process_task_results/yaml_to_json, /home/runner/work/openproblems-v2/openprobl...	1m 53s
viash_test (common/process_task_results/get_task_info, /home/runner/work/openproblems-v2/openprob...	2m 7s
viash_test (common/process_task_results/get_dataset_info, /home/runner/work/openproblems-v2/openp...	1m 33s
viash_test (common/create_task_readme, /home/runner/work/openproblems-v2/openproblems-v2/src/comm...	1m 46s
viash_test (denoising/methods/alra, /home/runner/work/openproblems-v2/openproblems-v2/src/tasks/d...	2m 31s
viash_test (denoising/methods/magic, /home/runner/work/openproblems-v2/openproblems-v2/src/tasks/...	1m 36s
viash_test (denoising/methods/dca, /home/runner/work/openproblems-v2/openproblems-v2/src/tasks/de...	3m 10s
viash_test (denoising/methods/knn_smoothing, /home/runner/work/openproblems-v2/openproblems-v2/sr...	2m 47s
viash_test (denoising/process_dataset, /home/runner/work/openproblems-v2/openproblems-v2/src/task...	1m 17s
viash_test (denoising/control_methods/perfect_denoising, /home/runner/work/openproblems-v2/openpr...	2m 8s
viash_test (denoising/control_methods/no_denoising, /home/runner/work/openproblems-v2/openproblem...	1m 31s
viash_test (denoising/metrics/poisson, /home/runner/work/openproblems-v2/openproblems-v2/src/task...	2m 0s
viash_test (denoising/metrics/mse, /home/runner/work/openproblems-v2/openproblems-v2/src/tasks/de...	2m 1s
viash_test (spatial_decomposition/methods/stereoscope, /home/runner/work/openproblems-v2/openprob...	6m 23s
viash_test (spatial_decomposition/methods/vanillanmf, /home/runner/work/openproblems-v2/openprobl...	2m 13s
viash_test (spatial_decomposition/methods/rctd, /home/runner/work/openproblems-v2/openproblems-v2...	24m 13s
viash_test (spatial_decomposition/methods/nnls, /home/runner/work/openproblems-v2/openproblems-v2...	1m 46s
viash_test (spatial_decomposition/methods/tangram, /home/runner/work/openproblems-v2/openproblems...	3m 22s
viash_test (spatial_decomposition/methods/seurat, /home/runner/work/openproblems-v2/openproblems-...	2m 13s
viash_test (spatial_decomposition/methods/nmfreg, /home/runner/work/openproblems-v2/openproblems-...	1m 25s
viash_test (spatial_decomposition/methods/cell2location, /home/runner/work/openproblems-v2/openpr...	23m 53s
viash_test (spatial_decomposition/methods/destvi, /home/runner/work/openproblems-v2/openproblems-...	9m 29s
viash_test (spatial_decomposition/process_dataset, /home/runner/work/openproblems-v2/openproblems...	1m 14s
viash_test (spatial_decomposition/dataset_simulator, /home/runner/work/openproblems-v2/openproble...	1m 28s
viash_test (spatial_decomposition/control_methods/random_proportions, /home/runner/work/openprobl...	1m 38s
viash_test (spatial_decomposition/control_methods/true_proportions, /home/runner/work/openproblem...	1m 51s
viash_test (spatial_decomposition/metrics/r2, /home/runner/work/openproblems-v2/openproblems-v2/s...	1m 21s
viash_test (predict_modality/methods/knnr_r, /home/runner/work/openproblems-v2/openproblems-v2/sr...	1m 43s
viash_test (predict_modality/methods/lm, /home/runner/work/openproblems-v2/openproblems-v2/src/ta...	1m 25s
viash_test (predict_modality/methods/lmds_irlba_rf, /home/runner/work/openproblems-v2/openproblem...	2m 36s
viash_test (predict_modality/methods/guanlab_dengkw_pm, /home/runner/work/openproblems-v2/openpro...	2m 23s
viash_test (predict_modality/methods/knnr_py, /home/runner/work/openproblems-v2/openproblems-v2/s...	1m 11s
viash_test (predict_modality/process_dataset, /home/runner/work/openproblems-v2/openproblems-v2/s...	2m 24s
viash_test (predict_modality/control_methods/solution, /home/runner/work/openproblems-v2/openprob...	2m 2s
viash_test (predict_modality/control_methods/zeros, /home/runner/work/openproblems-v2/openproblem...	1m 49s
viash_test (predict_modality/control_methods/random_predict, /home/runner/work/openproblems-v2/op...	1m 42s
viash_test (predict_modality/control_methods/mean_per_gene, /home/runner/work/openproblems-v2/ope...	1m 19s
viash_test (predict_modality/metrics/correlation, /home/runner/work/openproblems-v2/openproblems-...	1m 53s
viash_test (predict_modality/metrics/mse, /home/runner/work/openproblems-v2/openproblems-v2/src/t...	1m 33s
viash_test (label_projection/methods/scanvi_scarches, /home/runner/work/openproblems-v2/openprobl...	6m 48s
viash_test (label_projection/methods/logistic_regression, /home/runner/work/openproblems-v2/openp...	1m 23s
viash_test (label_projection/methods/scanvi, /home/runner/work/openproblems-v2/openproblems-v2/sr...	7m 49s
viash_test (label_projection/methods/naive_bayes, /home/runner/work/openproblems-v2/openproblems-...	2m 24s
viash_test (label_projection/methods/xgboost, /home/runner/work/openproblems-v2/openproblems-v2/s...	2m 6s
viash_test (label_projection/methods/knn, /home/runner/work/openproblems-v2/openproblems-v2/src/t...	1m 34s
viash_test (label_projection/methods/mlp, /home/runner/work/openproblems-v2/openproblems-v2/src/t...	1m 22s
viash_test (label_projection/process_dataset, /home/runner/work/openproblems-v2/openproblems-v2/s...	1m 57s
viash_test (label_projection/control_methods/true_labels, /home/runner/work/openproblems-v2/openp...	1m 55s
viash_test (label_projection/control_methods/majority_vote, /home/runner/work/openproblems-v2/ope...	1m 9s
viash_test (label_projection/control_methods/random_labels, /home/runner/work/openproblems-v2/ope...	2m 25s
viash_test (label_projection/metrics/accuracy, /home/runner/work/openproblems-v2/openproblems-v2/...	1m 28s
viash_test (label_projection/metrics/f1, /home/runner/work/openproblems-v2/openproblems-v2/src/ta...	1m 37s
viash_test (dimensionality_reduction/methods/densmap, /home/runner/work/openproblems-v2/openprobl...	1m 31s
viash_test (dimensionality_reduction/methods/simlr, /home/runner/work/openproblems-v2/openproblem...	4m 38s
viash_test (dimensionality_reduction/methods/ivis, /home/runner/work/openproblems-v2/openproblems...	2m 43s
viash_test (dimensionality_reduction/methods/umap, /home/runner/work/openproblems-v2/openproblems...	1m 25s
viash_test (dimensionality_reduction/methods/lmds, /home/runner/work/openproblems-v2/openproblems...	1m 55s
viash_test (dimensionality_reduction/methods/pymde, /home/runner/work/openproblems-v2/openproblem...	3m 11s
viash_test (dimensionality_reduction/methods/neuralee, /home/runner/work/openproblems-v2/openprob...	3m 30s
viash_test (dimensionality_reduction/methods/phate, /home/runner/work/openproblems-v2/openproblem...	2m 19s
viash_test (dimensionality_reduction/methods/pca, /home/runner/work/openproblems-v2/openproblems-...	2m 0s
viash_test (dimensionality_reduction/methods/diffusion_map, /home/runner/work/openproblems-v2/ope...	2m 13s
viash_test (dimensionality_reduction/methods/tsne, /home/runner/work/openproblems-v2/openproblems...	1m 27s
viash_test (dimensionality_reduction/process_dataset, /home/runner/work/openproblems-v2/openprobl...	4m 15s
viash_test (dimensionality_reduction/control_methods/random_features, /home/runner/work/openprobl...	1m 14s
viash_test (dimensionality_reduction/control_methods/spectral_features, /home/runner/work/openpro...	1m 58s
viash_test (dimensionality_reduction/control_methods/true_features, /home/runner/work/openproblem...	1m 21s
viash_test (dimensionality_reduction/metrics/trustworthiness, /home/runner/work/openproblems-v2/o...	1m 40s
viash_test (dimensionality_reduction/metrics/density_preservation, /home/runner/work/openproblems...	2m 24s
viash_test (dimensionality_reduction/metrics/coranking, /home/runner/work/openproblems-v2/openpro...	1m 23s
viash_test (dimensionality_reduction/metrics/clustering_performance, /home/runner/work/openproble...	2m 25s
viash_test (dimensionality_reduction/metrics/distance_correlation, /home/runner/work/openproblems...	1m 41s
viash_test (batch_integration/methods/scvi, /home/runner/work/openproblems-v2/openproblems-v2/src...	4m 49s
viash_test (batch_integration/methods/fastmnn_embedding, /home/runner/work/openproblems-v2/openpr...	2m 57s
viash_test (batch_integration/methods/fastmnn_feature, /home/runner/work/openproblems-v2/openprob...	1m 40s
viash_test (batch_integration/methods/scanorama_embed, /home/runner/work/openproblems-v2/openprob...	2m 38s
viash_test (batch_integration/methods/pyliger, /home/runner/work/openproblems-v2/openproblems-v2/...	2m 49s
viash_test (batch_integration/methods/scanvi, /home/runner/work/openproblems-v2/openproblems-v2/s...	4m 14s
viash_test (batch_integration/methods/combat, /home/runner/work/openproblems-v2/openproblems-v2/s...	1m 18s
viash_test (batch_integration/methods/mnn_correct, /home/runner/work/openproblems-v2/openproblems...	2m 33s
viash_test (batch_integration/methods/scalex_embed, /home/runner/work/openproblems-v2/openproblem...	6m 23s
viash_test (batch_integration/methods/scalex_feature, /home/runner/work/openproblems-v2/openprobl...	3m 52s
viash_test (batch_integration/methods/liger, /home/runner/work/openproblems-v2/openproblems-v2/sr...	3m 54s
viash_test (batch_integration/methods/bbknn, /home/runner/work/openproblems-v2/openproblems-v2/sr...	1m 53s
viash_test (batch_integration/methods/mnnpy, /home/runner/work/openproblems-v2/openproblems-v2/sr...	1m 54s
viash_test (batch_integration/methods/scanorama_feature, /home/runner/work/openproblems-v2/openpr...	2m 23s
viash_test (batch_integration/process_dataset, /home/runner/work/openproblems-v2/openproblems-v2/...	1m 41s
viash_test (batch_integration/control_methods/perfect_integration/celltype_embed, /home/runner/wo...	2m 4s
viash_test (batch_integration/control_methods/perfect_integration/celltype_jitter_embed, /home/ru...	1m 13s
viash_test (batch_integration/control_methods/random_integration/global_graph, /home/runner/work/...	4m 5s
viash_test (batch_integration/control_methods/random_integration/global_feature, /home/runner/wor...	2m 45s
viash_test (batch_integration/control_methods/random_integration/celltype_embed, /home/runner/wor...	1m 25s
viash_test (batch_integration/control_methods/random_integration/celltype_feature, /home/runner/w...	2m 59s
viash_test (batch_integration/control_methods/random_integration/batch_graph, /home/runner/work/o...	2m 14s
viash_test (batch_integration/control_methods/random_integration/celltype_graph, /home/runner/wor...	1m 15s
viash_test (batch_integration/control_methods/random_integration/batch_embed, /home/runner/work/o...	1m 13s
viash_test (batch_integration/control_methods/random_integration/global_embed, /home/runner/work/...	2m 41s
viash_test (batch_integration/control_methods/random_integration/batch_feature, /home/runner/work...	1m 22s
viash_test (batch_integration/control_methods/no_integration/global_graph, /home/runner/work/open...	2m 49s
viash_test (batch_integration/control_methods/no_integration/global_feature, /home/runner/work/op...	1m 15s
viash_test (batch_integration/control_methods/no_integration/batch_embed, /home/runner/work/openp...	2m 28s
viash_test (batch_integration/control_methods/no_integration/global_embed, /home/runner/work/open...	1m 21s
viash_test (batch_integration/transformers/embed_to_graph, /home/runner/work/openproblems-v2/open...	1m 52s
viash_test (batch_integration/transformers/feature_to_embed, /home/runner/work/openproblems-v2/op...	2m 23s
viash_test (batch_integration/metrics/clustering_overlap, /home/runner/work/openproblems-v2/openp...	1m 21s
viash_test (batch_integration/metrics/isolated_label_asw, /home/runner/work/openproblems-v2/openp...	1m 26s
viash_test (batch_integration/metrics/isolated_label_f1, /home/runner/work/openproblems-v2/openpr...	2m 41s
viash_test (batch_integration/metrics/cell_cycle_conservation, /home/runner/work/openproblems-v2/...	1m 24s
viash_test (batch_integration/metrics/asw_batch, /home/runner/work/openproblems-v2/openproblems-v...	2m 25s
viash_test (batch_integration/metrics/pcr, /home/runner/work/openproblems-v2/openproblems-v2/src/...	1m 29s
viash_test (batch_integration/metrics/graph_connectivity, /home/runner/work/openproblems-v2/openp...	1m 51s
viash_test (batch_integration/metrics/hvg_overlap, /home/runner/work/openproblems-v2/openproblems...	1m 48s
viash_test (batch_integration/metrics/asw_label, /home/runner/work/openproblems-v2/openproblems-v...	2m 45s
viash_test (batch_integration/metrics/kbet, /home/runner/work/openproblems-v2/openproblems-v2/src...	2m 34s
viash_test (match_modalities/methods/procrustes, /home/runner/work/openproblems-v2/openproblems-v...	1m 38s
viash_test (match_modalities/methods/harmonic_alignment, /home/runner/work/openproblems-v2/openpr...	2m 35s
viash_test (match_modalities/methods/fastmnn, /home/runner/work/openproblems-v2/openproblems-v2/s...	1m 32s
viash_test (match_modalities/methods/scot, /home/runner/work/openproblems-v2/openproblems-v2/src/...	6m 13s
viash_test (match_modalities/process_dataset, /home/runner/work/openproblems-v2/openproblems-v2/s...	1m 18s
viash_test (match_modalities/control_methods/random_features, /home/runner/work/openproblems-v2/o...	1m 16s
viash_test (match_modalities/control_methods/true_features, /home/runner/work/openproblems-v2/ope...	1m 37s
viash_test (match_modalities/metrics/knn_auc, /home/runner/work/openproblems-v2/openproblems-v2/s...	2m 35s
viash_test (match_modalities/metrics/mse, /home/runner/work/openproblems-v2/openproblems-v2/src/t...	1m 25s
viash_test (spatially_variable_genes/methods/spatialde, /home/runner/work/openproblems-v2/openpro...	3m 39s
viash_test (spatially_variable_genes/methods/spanve, /home/runner/work/openproblems-v2/openproble...	1m 30s
viash_test (spatially_variable_genes/methods/scgco, /home/runner/work/openproblems-v2/openproblem...	4m 40s
viash_test (spatially_variable_genes/methods/spark_x, /home/runner/work/openproblems-v2/openprobl...	3m 35s
viash_test (spatially_variable_genes/methods/nnsvg, /home/runner/work/openproblems-v2/openproblem...	12m 49s
viash_test (spatially_variable_genes/methods/spagcn, /home/runner/work/openproblems-v2/openproble...	3m 54s
viash_test (spatially_variable_genes/methods/spatialde2, /home/runner/work/openproblems-v2/openpr...	5m 32s
viash_test (spatially_variable_genes/methods/somde, /home/runner/work/openproblems-v2/openproblem...	1m 50s
viash_test (spatially_variable_genes/methods/sepal, /home/runner/work/openproblems-v2/openproblem...	2m 11s
viash_test (spatially_variable_genes/methods/gpcounts, /home/runner/work/openproblems-v2/openprob...	27m 19s
viash_test (spatially_variable_genes/methods/spark, /home/runner/work/openproblems-v2/openproblem...	6m 48s
viash_test (spatially_variable_genes/methods/spagft, /home/runner/work/openproblems-v2/openproble...	3m 12s
viash_test (spatially_variable_genes/methods/boostgp, /home/runner/work/openproblems-v2/openprobl...	27m 46s
viash_test (spatially_variable_genes/methods/moran_i, /home/runner/work/openproblems-v2/openprobl...	2m 26s
viash_test (spatially_variable_genes/process_dataset/split_dataset, /home/runner/work/openproblem...	2m 13s
viash_test (spatially_variable_genes/process_dataset/select_reference, /home/runner/work/openprob...	9m 10s
viash_test (spatially_variable_genes/process_dataset/simulate_svg, /home/runner/work/openproblems...	3m 25s
viash_test (spatially_variable_genes/control_methods/random_ranking, /home/runner/work/openproble...	1m 22s
viash_test (spatially_variable_genes/control_methods/true_ranking, /home/runner/work/openproblems...	1m 46s
viash_test (spatially_variable_genes/metrics/correlation, /home/runner/work/openproblems-v2/openp...	4m 39s
	8h 19m 26s

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Add spatially variable genes task #3901

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Add spatially variable genes task #3901

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