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GSoC 2019: Patient search criteria added in openmrs core #2980

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Reyano132
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The functionality of patient search criteria module added in openmrs core. This is part of my GSoC 2019 Project. https://wiki.openmrs.org/display/projects/Patient+Search+Criteria

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coveralls commented Aug 3, 2019

Coverage Status

Coverage increased (+0.006%) to 59.981% when pulling 6c951bd on Reyano132:final into 230a4a5 on openmrs:master.

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In general there are several code duplication which can be removed

*/
public List<Patient> getPatients(String query, Date birthdate, Integer start, Integer length, Boolean includeVoided)
throws DAOException;

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@Reyano132 There are eight getPatients methods with different input parameters. If you give them a proper name based on the input parameters that will improve the readability. Otherwise it will be difficult to figure out what is the difference between these methods.

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Hey @dilanthas, I changed the names of methods as per inputs


return patients;
}

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There are some code duplication in above methods. Except one line, the rest of the code is same in the above methods. For example the difference between getPatients starts from line 820, getPatients starts from line 847 is what LuceneQuery you are building. I think this can be improved

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Also, I removed code duplication.

List<Patient> patients = findPatients(query, includeVoided, start, length);
List<Patient> result=new LinkedList<>();
for (Patient p : patients) {
if (p.getGender().equals(gender)) {

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This filtering can be done using java8 stream filtering. Example

findPatients(query, includeVoided, start, length).stream().filter(patient -> patient.getGender().equals(gender)).collect(Collectors.toList());

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thanks for the help, I use stream filter as you mention.

String minChars = Context.getAdministrationService().getGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_MIN_SEARCH_CHARACTERS);

if (minChars == null || !StringUtils.isNumeric(minChars)) {
minChars = "" + OpenmrsConstants.GLOBAL_PROPERTY_DEFAULT_MIN_SEARCH_CHARACTERS;

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any reason to append "" in the beginning ?

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For casting int to string, although I removed that part

}

@Override
public List<Patient> getPatients(String query, Date from, Date to, Integer start, Integer length,

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Since this is a long method It would be better to add some comments in this method body by explaining whats happening .

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I improved the method

}

@Override
public List<Patient> getPatients(String query,Date birthdate, Integer start, Integer length,

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this methods body is quite similar to the above getPatients method body and have lots of duplicate code.

List<Patient> patients = getPatients(query, from, to, start, length, includeVoided);
List<Patient> result= new LinkedList<>();
for (Patient p : patients) {
if (p.getGender().equals(gender)) {

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please use java8 stream filtering

List<Patient> patients = getPatients(query, birthdate, start, length, includeVoided);
List<Patient> result=new LinkedList<>();
for (Patient p : patients) {
if (p.getGender().equals(gender)) {

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please use java8 stream filtering

if (namesSize > tmpStart) {
ListPart<Object[]> patientNames = birthdateQuery.listPartProjection(tmpStart, tmpLength, "personId");
patientNames.getList().forEach(patientName -> patients.add(getPatient((Integer) patientName[0])));
for(Patient p:patients) {

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please use java8 stream filtering

*/

@Override
public List<Patient> getPatients(String name, String identifier, List<PatientIdentifierType> identifierTypes,

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I think this method should be break in to several other methods: With all these if and else conditions its really hard to read whats going on.

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I divide this method into two methods, now it becomes easy to understand

@dkayiwa
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dkayiwa commented Aug 6, 2019

@Reyano132 did you see the above review comments?

@Reyano132
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yes, @dkayiwa, I'm working on it

@Reyano132
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@dkayiwa sir, can you please merge this PR. It's ready and I have to use this feature in core apps module

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dkayiwa commented Aug 8, 2019

@Reyano132 have your mentors reviewed and approved it?

@kaweesi
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kaweesi commented Aug 8, 2019

hi @Reyano132, this looks impressive at first glance, i need to test it as soon as i can. I have some suggestions but in a meantime, please move all these other changes except for ones about the SEARCH_INDEX_VERSION version, Person.java and Patient.java into our search criteria module (If they already exist in the module, then clear them off this PR).

i have created https://github.com/openmrs/openmrs-module-patientsearchcriteria please after migrating these changes into your module, point git to the new and merge it into your local branch, open up one pull request from https://github.com/Reyano132/openmrs-module-patientsearchcriteria pointing to this new repository.

I am also looking forward to seeing your functional UI changes.
Kind regards

@Reyano132 Reyano132 force-pushed the final branch 4 times, most recently from 63bb1f5 to acf9b3a Compare August 9, 2019 13:24
@HerbertYiga
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@Reyano132 Have you seen the above comments for @k-joseph ?

@Reyano132
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@kaweesi sir, As you said I changed this PR. Also, I create new PR for patientsearchcriteria, here : openmrs/openmrs-module-patientsearchcriteria#1

@Reyano132
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@dkayiwa and @kaweesi sir, I solved the problem of coverage/coveralls issue by adding the unit test case related to person index. Can you please merge this PR?

@Reyano132
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@kaweesi and @dkayiwa sir can please merge this PR? I'm running out of time

@@ -599,9 +599,9 @@ public static String getOpenmrsProperty(String property) {
/**
* Indicates the version of the search index. The index will be rebuilt, if the version changes.
*
* @since 1.11
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Why did you change this?

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when we build the openmrs core, it will generate a person's Lucene index

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dkayiwa commented Nov 28, 2019

@Reyano132 can you bring this again to the attention of your primary mentor?

@ibacher ibacher force-pushed the master branch 2 times, most recently from e8f7850 to 1877e06 Compare December 14, 2020 19:29
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tl;dr our action detected no activity on this PR and will close it in 30 days if the stale label is not removed.

OpenMRS welcomes your contribution! It means a lot to us that you want to contribute to equity in healthcare!

This PR has not seen any activity in the last 5 months. That is why we wanted to check whether you are still working on it or need assistance from our side.
Please note that this is an automated message and we might very well be the reason why there has not been any activity lately. We certainly do not want to discourage you from contributing. We do need to be honest in that OpenMRS has limited resources for reviewing PRs.

If you do not have time to continue the work or have moved on you don’t need to do anything. We will automatically close the PR in 30 days. We hope to see you back soon :)
If you would like to continue working on it or require help from us please remove the stale label and respond by commenting on the issue.

@github-actions github-actions bot added the Stale label Jun 15, 2021
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github-actions bot commented Aug 2, 2021

tl;dr closing this PR since it has not seen any activity in the last 6 months.

OpenMRS welcomes your contribution! It means a lot to us that you want to contribute to equity in healthcare! We certainly do not want to discourage you from contributing. We do need to be honest in that OpenMRS has limited resources for reviewing PRs. Your PR has not seen any activity in the last 6 months. This is why we have decided to close this PR for now. This allows us OpenMRS reviewers to focus our limited time to review all other PRs in a timely and professional manner.

Please feel free to reassign yourself to the issue you worked on in our JIRA when you have time to focus on it. After that reopen a new PR and we will be glad to work with you to get your contribution merged. Thank you very much for your help and understanding :)

@github-actions github-actions bot closed this Aug 2, 2021
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6 participants