Merge pull request #628 from arayabrain/develop-main

add cnmf quality params
oist · Mar 27, 2024 · a0c48a4 · a0c48a4
2 parents 647be4f + e232fef
commit a0c48a4
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/studio/app/optinist/wrappers/caiman/params/caiman_cnmf.yaml b/studio/app/optinist/wrappers/caiman/params/caiman_cnmf.yaml
@@ -110,3 +110,15 @@ advanced:
     do_merge: True
     merge_parallel: False
     max_merge_area: null
+
+  quality_evaluation_params:
+    SNR_lowest: 0.5
+    cnn_lowest: 0.1
+    gSig_range: null
+    min_SNR: 2.5
+    min_cnn_thr: 0.9
+    rval_lowest: -1
+    rval_thr: 0.8
+    use_cnn: True
+    use_ecc: False
+    max_ecc: 3