New phosphoros filters #3167
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python application | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| types: [labeled, unlabeled, opened, edited, synchronize] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| TEST_ONLY_FAST: ${{ contains( github.event.pull_request.labels.*.name, 'test-only-fast') }} | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest mypy pylint pytest-cov pytest-xdist wheel | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| pip install -e .[test,ontology] | |
| curl -o tests/oda-ontology.ttl https://raw.githubusercontent.com/oda-hub/ontology/main/ontology.ttl | |
| - name: Lint with flake8 | |
| if: ${{ env.TEST_ONLY_FAST != 'true' }} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics || echo "failed lint" | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics || echo "failed second lint" | |
| - name: PyLint - more lint | |
| if: ${{ env.TEST_ONLY_FAST != 'true' }} | |
| run: | | |
| pylint -E cdci_data_analysis || echo 'this is fine!' | |
| - name: MyPy | |
| if: ${{ env.TEST_ONLY_FAST != 'true' }} | |
| run: | | |
| mypy cdci_data_analysis --ignore-missing-imports || echo 'this is fine too!' | |
| - name: Test fast subset with pytest | |
| run: | | |
| python -m pytest tests --cov=cdci_data_analysis -sv --full-trace --log-cli-level=DEBUG -m "not test_drupal and fast and not test_renku and not test_matrix" --durations=0 | |
| - name: Test everything with pytest | |
| if: ${{ env.TEST_ONLY_FAST != 'true' }} | |
| run: | | |
| python -m pytest tests --cov=cdci_data_analysis -sv --full-trace --log-cli-level=DEBUG -m "not test_drupal and not test_renku and not test_matrix" --durations=0 | |
| # I wonder how this interacts with the Github App. But this is not only for PR. Also this does not always work | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| verbose: true |