Skip to content

Commit

Permalink
do not include bridge files when making composite stages. Fixes issue #…
Browse files Browse the repository at this point in the history 
…521
  • Loading branch information
@cmungall
cmungall committed Sep 19, 2014
1 parent c58d408 commit a133963
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions Makefile
View file
Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,7 @@ uberon_edit.owl: uberon_edit_x.obo

# This is primarily for use in editing the phenoscape-ext.owl file
core.owl: uberon_edit.owl
owltools $< -o -f ofn $@
owltools $(UCAT) $< -o -f ofn $@

pe:
mkdir pe
Expand Down Expand Up @@ -571,8 +571,10 @@ cl-core.owl: cl-core.obo
update-stages: $(EDITSRC)
(cd developmental-stage-ontologies && svn update) && touch $@

composite-stages.obo: update-stages
owltools developmental-stage-ontologies/*/*-uberon.obo --merge-support-ontologies -o -f obo --no-check $@
CSTAGES := $(filter-out %bridge-to-uberon.obo, $(wildcard developmental-stage-ontologies/*/*-uberon.obo))

composite-stages.obo:
owltools $(CSTAGES) --merge-support-ontologies -o -f obo --no-check $@

#composites: composite-metazoan.owl composite-vertebrate.owl composite-mammal.owl
composites: composite-metazoan.obo composite-vertebrate.obo
Expand Down

2 comments on commit a133963

@cmungall
Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

looks like this was a mistake

@fbastian
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

What? You don't need the xxx-bridge-to-uberon.obo and xxx-uberon.obo files that we generated anymore? I'm confused :p

Please sign in to comment.