FAO release 2020-05-07

obophenotype · May 7, 2020 · 4dff2ca · 4dff2ca
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diff --git a/fao-base.obo b/fao-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: releases/2020-01-23/fao/fao-base.owl
+data-version: releases/2020-05-07/fao/fao-base.owl
 date: 23:01:2020 16:30
 saved-by: midori
 auto-generated-by: OBO-Edit 2.3.1
@@ -349,7 +349,7 @@ id: FAO:0000048
 name: Hulle cell
 def: "A specialized multinucleate cell that originates from a nest-like aggregation of hyphae during sexual development. Hulle cells serve as nurse cells to the developing cleistothecium." [AspGD:mcc, PMID:19210625]
 comment: Note that "Hulle" is properly written with an umlaut on the "u".
-is_a: FAO:0000001 ! fungal structure
+is_a: FAO:0000018 ! unicellular structure
 relationship: develops_from FAO:0001001 ! hypha
 
 [Term]
@@ -452,25 +452,24 @@ creation_date: 2013-04-02T03:23:27Z
 id: FAO:0000060
 name: clamp cell
 def: "A hyphal cell that forms a clamp connection, a structure that separates differing nuclei, which have been obtained through mating of hyphae of differing sexual types, into distinct hyphal segments that are separated by septa (cross walls)." [CGD:doi]
-is_a: FAO:0001009 ! septate hypha
+is_a: FAO:0000018 ! unicellular structure
+relationship: part_of FAO:0001009 ! septate hypha
 created_by: mariacostanzo
 creation_date: 2013-04-02T03:28:00Z
 
 [Term]
 id: FAO:0000061
 name: fused clamp
 def: "A structure produced in a dikaryotic hypha upon migration of the nuclei after mating of hyphae of differing sexual types.  The clamp fuses to compartmentalize a nucleus within the subapical cell.  Note: A hyphal cell that forms a clamp connection is called a \"clamp cell\"." [CGD:doi]
-is_a: FAO:0000001 ! fungal structure
-relationship: part_of FAO:0000060 ! clamp cell
+is_a: FAO:0001009 ! septate hypha
 created_by: mariacostanzo
 creation_date: 2013-04-02T03:29:16Z
 
 [Term]
 id: FAO:0000062
 name: unfused clamp
 def: "A structure that separates the nuclei within monokaryotic hyphae into distinct hyphal segments. Monokaryotic hyphae are produced during unisexual reproduction or hyphal development of a diploid, in contrast to dikaryotic hyphae which are produced by mating of hyphae of differing sexual types." [CGD:doi]
-is_a: FAO:0000001 ! fungal structure
-relationship: part_of FAO:0000060 ! clamp cell
+is_a: FAO:0001009 ! septate hypha
 created_by: mariacostanzo
 creation_date: 2013-04-02T03:31:28Z
 
@@ -828,8 +827,9 @@ creation_date: 2020-01-23T14:04:34Z
 id: FAO:0002007
 name: conidiophore foot cell
 def: "A specialized cell with an enlarged cell wall that develops from a hyphal cell in a septate mycelium and swells at the aerial terminus to form a conidiophore vesicle. The aerial portion of the foot cell forms the conidiophore stalk." [FAO:doi]
-is_a: FAO:0001004 ! septate hypha in mycelium
+is_a: FAO:0000018 ! unicellular structure
 relationship: develops_from FAO:0000032 ! vegetative cell
+relationship: part_of FAO:0001004 ! septate hypha in mycelium
 created_by: midori
 creation_date: 2020-01-23T15:25:29Z
 

diff --git a/fao-base.owl b/fao-base.owl
@@ -9,7 +9,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fao.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fao/releases/2020-01-23/fao/fao-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fao/releases/2020-05-07/fao/fao-base.owl"/>
         <oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* FAO:$sequence(7,0000001,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:auto-generated-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
         <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">23:01:2020 16:30</oboInOwl:date>
@@ -1317,7 +1317,7 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000048 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000048">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000001"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000018"/>
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
@@ -1597,7 +1597,13 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000060 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000060">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000018"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A hyphal cell that forms a clamp connection, a structure that separates differing nuclei, which have been obtained through mating of hyphae of differing sexual types, into distinct hyphal segments that are separated by septa (cross walls).</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mariacostanzo</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2013-04-02T03:28:00Z</oboInOwl:creation_date>
@@ -1617,13 +1623,7 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000061 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000061">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000001"/>
-        <rdfs:subClassOf>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0000060"/>
-            </owl:Restriction>
-        </rdfs:subClassOf>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A structure produced in a dikaryotic hypha upon migration of the nuclei after mating of hyphae of differing sexual types.  The clamp fuses to compartmentalize a nucleus within the subapical cell.  Note: A hyphal cell that forms a clamp connection is called a &quot;clamp cell&quot;.</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mariacostanzo</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2013-04-02T03:29:16Z</oboInOwl:creation_date>
@@ -1643,13 +1643,7 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000062 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000062">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000001"/>
-        <rdfs:subClassOf>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0000060"/>
-            </owl:Restriction>
-        </rdfs:subClassOf>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A structure that separates the nuclei within monokaryotic hyphae into distinct hyphal segments. Monokaryotic hyphae are produced during unisexual reproduction or hyphal development of a diploid, in contrast to dikaryotic hyphae which are produced by mating of hyphae of differing sexual types.</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mariacostanzo</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2013-04-02T03:31:28Z</oboInOwl:creation_date>
@@ -2805,7 +2799,13 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0002007 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0002007">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001004"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000018"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0001004"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>

diff --git a/fao.obo b/fao.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: releases/2020-01-23
+data-version: releases/2020-05-07
 date: 23:01:2020 16:30
 saved-by: midori
 auto-generated-by: OBO-Edit 2.3.1
@@ -350,7 +350,7 @@ id: FAO:0000048
 name: Hulle cell
 def: "A specialized multinucleate cell that originates from a nest-like aggregation of hyphae during sexual development. Hulle cells serve as nurse cells to the developing cleistothecium." [AspGD:mcc, PMID:19210625]
 comment: Note that "Hulle" is properly written with an umlaut on the "u".
-is_a: FAO:0000001 ! fungal structure
+is_a: FAO:0000018 ! unicellular structure
 relationship: develops_from FAO:0001001 ! hypha
 
 [Term]
@@ -453,25 +453,24 @@ creation_date: 2013-04-02T03:23:27Z
 id: FAO:0000060
 name: clamp cell
 def: "A hyphal cell that forms a clamp connection, a structure that separates differing nuclei, which have been obtained through mating of hyphae of differing sexual types, into distinct hyphal segments that are separated by septa (cross walls)." [CGD:doi]
-is_a: FAO:0001009 ! septate hypha
+is_a: FAO:0000018 ! unicellular structure
+relationship: part_of FAO:0001009 ! septate hypha
 created_by: mariacostanzo
 creation_date: 2013-04-02T03:28:00Z
 
 [Term]
 id: FAO:0000061
 name: fused clamp
 def: "A structure produced in a dikaryotic hypha upon migration of the nuclei after mating of hyphae of differing sexual types.  The clamp fuses to compartmentalize a nucleus within the subapical cell.  Note: A hyphal cell that forms a clamp connection is called a \"clamp cell\"." [CGD:doi]
-is_a: FAO:0000001 ! fungal structure
-relationship: part_of FAO:0000060 ! clamp cell
+is_a: FAO:0001009 ! septate hypha
 created_by: mariacostanzo
 creation_date: 2013-04-02T03:29:16Z
 
 [Term]
 id: FAO:0000062
 name: unfused clamp
 def: "A structure that separates the nuclei within monokaryotic hyphae into distinct hyphal segments. Monokaryotic hyphae are produced during unisexual reproduction or hyphal development of a diploid, in contrast to dikaryotic hyphae which are produced by mating of hyphae of differing sexual types." [CGD:doi]
-is_a: FAO:0000001 ! fungal structure
-relationship: part_of FAO:0000060 ! clamp cell
+is_a: FAO:0001009 ! septate hypha
 created_by: mariacostanzo
 creation_date: 2013-04-02T03:31:28Z
 
@@ -829,8 +828,9 @@ creation_date: 2020-01-23T14:04:34Z
 id: FAO:0002007
 name: conidiophore foot cell
 def: "A specialized cell with an enlarged cell wall that develops from a hyphal cell in a septate mycelium and swells at the aerial terminus to form a conidiophore vesicle. The aerial portion of the foot cell forms the conidiophore stalk." [FAO:doi]
-is_a: FAO:0001004 ! septate hypha in mycelium
+is_a: FAO:0000018 ! unicellular structure
 relationship: develops_from FAO:0000032 ! vegetative cell
+relationship: part_of FAO:0001004 ! septate hypha in mycelium
 created_by: midori
 creation_date: 2020-01-23T15:25:29Z
 

diff --git a/fao.owl b/fao.owl
@@ -10,7 +10,7 @@
      xmlns:taxslim="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fao.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fao/releases/2020-01-23/fao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fao/releases/2020-05-07/fao.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/fao/imports/ncbitaxon_import.owl"/>
         <oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* FAO:$sequence(7,0000001,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:auto-generated-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
@@ -1319,7 +1319,7 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000048 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000048">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000001"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000018"/>
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
@@ -1599,7 +1599,13 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000060 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000060">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000018"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A hyphal cell that forms a clamp connection, a structure that separates differing nuclei, which have been obtained through mating of hyphae of differing sexual types, into distinct hyphal segments that are separated by septa (cross walls).</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mariacostanzo</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2013-04-02T03:28:00Z</oboInOwl:creation_date>
@@ -1619,13 +1625,7 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000061 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000061">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000001"/>
-        <rdfs:subClassOf>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0000060"/>
-            </owl:Restriction>
-        </rdfs:subClassOf>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A structure produced in a dikaryotic hypha upon migration of the nuclei after mating of hyphae of differing sexual types.  The clamp fuses to compartmentalize a nucleus within the subapical cell.  Note: A hyphal cell that forms a clamp connection is called a &quot;clamp cell&quot;.</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mariacostanzo</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2013-04-02T03:29:16Z</oboInOwl:creation_date>
@@ -1645,13 +1645,7 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0000062 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0000062">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000001"/>
-        <rdfs:subClassOf>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0000060"/>
-            </owl:Restriction>
-        </rdfs:subClassOf>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001009"/>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A structure that separates the nuclei within monokaryotic hyphae into distinct hyphal segments. Monokaryotic hyphae are produced during unisexual reproduction or hyphal development of a diploid, in contrast to dikaryotic hyphae which are produced by mating of hyphae of differing sexual types.</obo:IAO_0000115>
         <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mariacostanzo</oboInOwl:created_by>
         <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2013-04-02T03:31:28Z</oboInOwl:creation_date>
@@ -2807,7 +2801,13 @@
     <!-- http://purl.obolibrary.org/obo/FAO_0002007 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FAO_0002007">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0001004"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FAO_0000018"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FAO_0001004"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>

diff --git a/imports/ro_import.owl b/imports/ro_import.owl
@@ -51,8 +51,7 @@
 
     <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
-        <rdfs:label xml:lang="en">definition</rdfs:label>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
+        <rdfs:label>definition</rdfs:label>
     </owl:AnnotationProperty>