Releases: obophenotype/cell-ontology
Releases · obophenotype/cell-ontology
v2025-01-08
Release Notes 2025-01-08
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2851 |
| Number of annotations on CL terms | 13909 |
| Number of synonyms | 6052 |
| Number of unique references | 2137 |
| Number of unique references in definitions | 1604 |
| Number of relationships with CL term as subject | 3972 |
| Number of cellxgene classes | 804 |
| Number of HRA classes | 481 |
Classes added: 53
| Term |
|---|
| melanin-concentrating hormone neuron (CL:4042036) |
| CGRP-expressing neuron (CL:4042034) |
| liver-resident natural killer cell (CL:4047101) |
| caudal ganglionic eminence derived neuron (CL:4042039) |
| myotendinous junction nucleus (CL:4052024) |
| immature neuron (CL:4042028) |
| secretory pericyte (CL:4047032) |
| pituitary gland capillary endothelial cell (CL:4052016) |
| fallopian tube non-ciliated cell (CL:4052019) |
| limbal epithelial stem cell of cornea (CL:4033093) |
| externa theca cell (CL:4052013) |
| immune oligodendroglia (CL:4042031) |
| subpleural fibroblast (CL:4052029) |
| type IIx muscle cell (CL:4052026) |
| intestinal lamina propria fibroblast (CL:4047023) |
| stomach smooth muscle outer longitudinal layer cell (CL:4047035) |
| adventitial fibroblast (CL:4052030) |
| atretic follicular cell of ovary (CL:4033089) |
| respiratory airway secretory cell (CL:4052031) |
| uterine natural killer cell (CL:4052028) |
| granzyme K-associated CD8 T cell (CL:4052021) |
| atretic theca cell (CL:4052027) |
| PAX6 GABAergic cortical interneuron (CL:4042032) |
| endocrine gland capillary endothelial cell (CL:4052015) |
| smooth muscle cell of stomach (CL:4047034) |
| secretory epithelial cell (CL:1100001) |
| transit amplifying cell of gut (CL:4047017) |
| cortical immature neuron (CL:4042029) |
| pro-opiomelanocortin neuron (CL:4042033) |
| sst GABAergic neuron of the striatum (CL:4042037) |
| decidual resident macrophage (CL:4033088) |
| rostral primary motorneuron (CL:4042038) |
| glycinergic-GABAergic amacrine cell (CL:4033091) |
| lipid-associated macrophage (CL:4033086) |
| choroid plexus capillary endothelial cell (CL:4052017) |
| candelabrum cell (CL:4042030) |
| glutamatergic neuron of the basal ganglia (CL:4042040) |
| molecular layer interneuron (CL:4042035) |
| type G cell of stomach (CL:4047025) |
| fallopian tube epithelial cell (CL:4052018) |
| fallopian tube smooth muscle cell (CL:4052022) |
| interna theca cell (CL:4052012) |
| placental resident macrophage (CL:4033087) |
| pre-venule capillary cell (CL:4047030) |
| pancreatic islet capillary endothelial cell (CL:4052014) |
| middle primary motoneuron (CL:4042041) |
| diffuse bipolar 5 cell (CL:4033085) |
| CD57-positive enterocyte (CL:4033092) |
| post-arteriole capillary cell (CL:4047029) |
| lung resident granzyme K-associated CD8 T cell (CL:4052020) |
| luminal endometrial unciliated epithelial cell (CL:4052023) |
| atretic granulosa cell (CL:4033090) |
| neuromuscular junction nucleus (CL:4052025) |
Synonyms added: 116
| Term | New Synonym | Predicate |
|---|---|---|
| limbal epithelial stem cell of cornea (CL:4033093) | LESC | oio:hasRelatedSynonym |
| pro-opiomelanocortin neuron (CL:4042033) | POMC-expressing neuron | oio:hasRelatedSynonym |
| fallopian tube smooth muscle cell (CL:4052022) | oviduct smooth muscle cell | oio:hasBroadSynonym |
| neuromuscular junction nucleus (CL:4052025) | NMJ nuclues | oio:hasRelatedSynonym |
| CGRP-expressing neuron (CL:4042034) | CGRP-expressing interneuron | oio:hasRelatedSynonym |
| decidual cell (CL:2000002) | decidualized endometrial stromal cell | oio:hasExactSynonym |
| oviduct secretory cell (CL:1001591) | oviduct glandular cell | oio:hasRelatedSynonym |
| respiratory tract multiciliated cell (CL:4030034) | respiratory ciliated cell | oio:hasExactSynonym |
| type IIx muscle cell (CL:4052026) | type 2x muscle fiber | oio:hasExactSynonym |
| decidual resident macrophage (CL:4033088) | maternal decidual macrophage | oio:hasBroadSynonym |
| duodenum secretory cell (CL:1001589) | duodenum glandular cells | oio:hasNarrowSynonym |
| transit amplifying cell of gut (CL:4047017) | transit-amplifying cell | oio:hasBroadSynonym |
| diffuse bipolar 5 cell (CL:4033085) | DB5 cell | oio:hasRelatedSynonym |
| respiratory tract hillock cell (CL:4030023) | hillock cell of respiratory tract | oio:hasExactSynonym |
| granzyme K-associated CD8 T cell (CL:4052021) | granzyme K+ CD8 T cell | oio:hasExactSynonym |
| cortical immature neuron (CL:4042029) | cIN | oio:hasRelatedSynonym |
| luminal endometrial unciliated epithelial cell (CL:4052023) | luminal cell of endometrium | oio:hasBroadSynonym |
| pulmonary neuroendocrine cell (CL:1000223) | lung neuroendocrine cell | oio:hasExactSynonym |
| polymodal neuron (CL:0000102) | polymodal sensory neuron | oio:hasRelatedSynonym |
| liver-resident natural killer cell (CL:4047101) | liver NK cell | oio:hasExactSynonym |
| respiratory tract suprabasal cell (CL:4033048) | respiratory suprabasal cell | oio:hasExactSynonym |
| liver-resident natural killer cell (CL:4047101) | he-NK | oio:hasExactSynonym |
| fallopian tube multiciliated cell (CL:4030007) | fallopian tube ciliated cell | oio:hasExactSynonym |
| molecular layer interneuron (CL:4042035) | MLI | oio:hasRelatedSynonym |
| CAP motoneuron (CL:0000532) | caudal primary motor neuron | oio:hasRelatedSynonym |
| immature neuron (CL:4042028) | IN | oio:hasRelatedSynonym |
| fallopian tube smooth muscle cell (CL:4052022) | uterine tube smooth muscle cell | oio:hasExactSynonym |
| skin sebocyte (CL:0002140) | acinar cell of sebaceous gland | oio:hasBroadSynonym |
| interna theca cell (CL:4052012) | interna TC | oio:hasRelatedSynonym |
| lipid-associated macrophage (CL:4033086) | LAM | oio:hasRelatedSynonym |
| myotendinous junction nucleus (CL:4052024) | myotendinous junction myonuclei | oio:hasExactSynonym |
| liver-resident natural killer cell (CL:4047101) | intrahepatic NK | oio:hasExactSynonym |
| respiratory airway secretory cell (CL:4052031) | terminal and respiratory bronchioles secretory cell | oio:hasRelatedSynonym |
| myotendinous junction nucleus (CL:4052024) | MTJ nucleus | oio:hasRelatedSynonym |
| multiciliated epithelial cell (CL:0005012) | multi-ciliated epithelial cell | oio:hasExactSynonym |
| fallopian tube epithelial cell (CL:4052018) | oviduct epithelial cell | oio:hasBroadSynonym |
| uterine natural killer cell (CL:4052028) | endometrial natural killer cell | oio:hasNarrowSynonym |
| lung resident granzyme K-associated CD8 T cell (CL:4052020) | lung resident CD8-GZMK | oio:hasRelatedSynonym |
| pre-venule capillary cell (CL:4047030) | Cap-Venous endothelial cell | oio:hasExactSynonym |
| stomach neuroendocrine cell (CL:1000222) | diffuse endocrine system cell | oio:hasBroadSynonym |
| candelabrum cell (CL:4042030) | candelabrum interneuron | oio:hasExactSynonym |
| respiratory tract hillock cell (CL:4030023) | respiratory hillock cell | oio:hasExactSynonym |
| granzyme K-associated CD8 T cell (CL:4052021) | CD8-GZMK cell | oio:hasRelatedSynonym |
| melanin-concentrating hormone neuron (CL:4042036) | MCH neuron | oio:hasRelatedSynonym |
| Lugaro cell (CL:0011006) | globular cell | oio:hasRelatedSynonym |
| fallopian tube epithelial cell (CL:4052018) | uterine tube epithelial cell | oio:hasExactSynonym |
| stomach neuroendocrine cell (CL:1000222) | DES cell | oio:hasBroadSynonym |
| pancreatic islet capillary endothelial cell (CL:4052014) | islet endothelial cell | oio:hasBroadSynonym |
| liver-resident natural killer cell (CL:4047101) | hepatic NK | oio:hasExactSynonym |
| CGRP-expressing neuron (CL:4042034) | CGRP-positive neuron | oio:hasRelatedSynonym |
| sst GABAergic neuron of the striatum (CL:4042037) | striatal SST+ IN | oio:hasRelatedSynonym |
| respiratory tract epithelial cell (CL:0002368) | respiratory epithelial cell | oio:hasExactSynonym |
| middle primary motoneuron (CL:4042041) | MiP | oio:hasRelatedSynonym |
| interna theca cell (CL:4052012) | inTC | oio:hasRelatedSynonym |
| neuromuscular junction nucleus (CL:4052025) | neuromuscular junction nuclei | oio:hasExactSynonym |
| skin sebocyte (CL:0002140) | acinar cell of skin sebaceous gland | oio:hasExactSynonym |
| candelabrum cell (CL:4042030) | CC | oio:hasRelatedSynonym |
| epididymis secretory cell (CL:1001590) | epididymis glandular cell | oio:hasRelatedSynonym |
| respiratory airway secretory cell (CL:4052031) | RAS cell | oio:hasRelatedSynonym |
| externa theca cell (CL:4052013) | externa TC | oio:hasRelatedSynonym |
| liver-resident natural killer cell (CL:4047101) | lr-NK | oio:hasExactSynonym |
| externa theca cell (CL:4052013) | exTC | oio:hasRelatedSynonym |
| luminal endometrial unciliated epithelial cell (CL:4052023) | endometrial luminal epithelial cell | oio:hasBroadSynonym |
| lung multiciliated epithelial cell (CL:1000271) | lung ciliated cell | oio:hasExactSynonym |
| intestinal lamina propria fibroblast (CL:4047023) | S1 fibroblast | oio:hasRelatedSynonym |
| CD57-positive enterocyte (CL:4033092) | CD57+ enterocyte | oio:hasExactSynonym |
| glandular endometrial multiciliated epithelial cell (CL:4030042) | glandular endometrial ciliated epithelial cell | oio:hasExactSynonym |
| glycinergic-GABAergic amacrine cell (CL:4033091) | glycinergic/GABAergic amacrine neuron | oio:hasExactSynonym |
| immune oligodendroglia (CL:4042031) | immune oligodendrocyte | oio:hasExactSynonym |
| pancreatic islet capillary endothelial cell (CL:4052014) | pancreatic islet endothelial cell | oio:hasBroadSynonym |
| ... |
Contributors
dosumis, gouttegd, and 4 other contributors
Assets 52
- 1.43 MB
2025-01-08T11:25:49Z - 627 KB
2025-01-08T11:25:50Z - 2.25 MB
2025-01-08T11:25:50Z - 66.2 KB
2025-01-08T11:25:51Z - 1.91 MB
2025-01-08T11:25:52Z - 846 KB
2025-01-08T11:25:52Z - 2.94 MB
2025-01-08T11:25:52Z - 89.7 KB
2025-01-08T11:25:52Z - 5.04 MB
2025-01-08T11:25:25Z - 2.19 MB
2025-01-08T11:25:25Z -
2025-01-08T11:10:14Z -
2025-01-08T11:10:14Z - Loading
v2024-09-26
Release Notes 2024-09-26
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2801 |
| Number of annotations on CL terms | 13346 |
| Number of synonyms | 5894 |
| Number of unique references | 2039 |
| Number of unique references in definitions | 1465 |
| Number of relationships with CL term as subject | 3815 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 495 |
Relationships added: 389
| Subject | Predicate | Object |
|---|---|---|
| preameloblast (CL:0007000) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| beta2-tanycyte (CL:4042020) | RO:0002292 | PR:000007479 |
| mature T cell (CL:0002419) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| L6 th sst GABAergic interneuron (Mmus) (CL:4023075) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| cumulus cell (CL:0000711) | subClassOf (rdfs:subClassOf) | granulosa cell (CL:0000501) |
| intestinal subserosal fibroblast (CL:4052005) | BFO:0000050 | UBERON:0012375 |
| CD27-low, CD11b-low immature natural killer cell, mouse (CL:0002345) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| DN2 thymocyte (CL:0000806) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| substantia nigra dopaminergic neuron (CL:4042025) | subClassOf (rdfs:subClassOf) | neuron of the substantia nigra (CL:0002614) |
| lung secretory cell (CL:1000272) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| mesenchymal cell (CL:0008019) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD16-negative, CD56-bright natural killer cell, human (CL:0000938) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| Kit-negative, Ly-76 high orthochromatophilic erythroblasts (CL:0002017) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| endocrine cell (CL:0000163) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| reticulocyte (CL:0000558) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| beta1-tanycyte (CL:4042019) | RO:0002292 | PR:000007479 |
| neuroglioblast (sensu Nematoda and Protostomia) (CL:0000468) | RO:0002162 | NCBITaxon:33317 |
| astrocyte-restricted precursor (CL:4042022) | RO:0002203 | astrocyte (CL:0000127) |
| iridophore (CL:0000431) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| choroid plexus epithelial cell (CL:0000706) | subClassOf (rdfs:subClassOf) | brush border epithelial cell (CL:0000239) |
| single nucleate cell (CL:0000226) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| squamous epithelial cell (CL:0000076) | BFO:0000050 | UBERON:0006914 |
| salivary gland glandular cell (CL:1001596) | subClassOf (rdfs:subClassOf) | salivary gland cell (CL:0009005) |
| spermatid (CL:0000018) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| erythrophore (CL:0000574) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| memory CCR4-positive regulatory T cell (CL:0001046) | RO:0002162 | NCBITaxon:9606 |
| subepithelial intestinal fibroblast (CL:4052007) | subClassOf (rdfs:subClassOf) | fibroblast (CL:0000057) |
| myeloid suppressor cell (CL:0000889) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| oxytocin receptor sst GABAergic cortical interneuron (CL:4023122) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| CD56-positive, CD161-positive immature natural killer cell, human (CL:0002338) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human (CL:0001074) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| invertebrate nurse cell (CL:0000026) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| cumulus cell (CL:0000711) | RO:0002202 | cuboidal granulosa cell (CL:4033084) |
| plasma cell (CL:0000786) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| oocyte (CL:0000023) | RO:0002162 | NCBITaxon:33208 |
| neuronal-restricted precursor (CL:4042021) | subClassOf (rdfs:subClassOf) | neuron associated cell (sensu Vertebrata) (CL:0000123) |
| Eumycetozoan cell (CL:0000257) | RO:0002162 | NCBITaxon:142796 |
| glioblast (CL:0000030) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| macrophage derived foam cell (CL:0000517) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| adepithelial cell (CL:0000462) | RO:0002162 | NCBITaxon:50557 |
| L4 sst Martinotti interneuron (Mmus) (CL:4023031) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| connective tissue cell (CL:0002320) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| mural granulosa cell (CL:4033067) | subClassOf (rdfs:subClassOf) | granulosa cell (CL:0000501) |
| sebaceous gland cell (CL:2000021) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| muscle precursor cell (CL:0000680) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| intestinal subserosal fibroblast (CL:4052005) | BFO:0000050 | UBERON:0001243 |
| luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| endothelial cell (CL:0000115) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| cell of skeletal muscle (CL:0000188) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| xanthophore cell (CL:0000430) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| lung ciliated cell (CL:1000271) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
| cystoblast (CL:0000722) | RO:0002162 | NCBITaxon:6656 |
| elicited macrophage (CL:0000861) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| sperm (CL:0000019) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD7-positive lymphoid progenitor cell (CL:0001028) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| sst GABAergic cortical interneuron (CL:4023017) | subClassOf (rdfs:subClassOf) | medial ganglionic eminence derived GABAergic cortical interneuron (CL:4023069) |
| intestinal fibroblastic reticular cell (CL:4052004) | BFO:0000050 | UBERON:0001962 |
| striated cell of salivary gland (CL:4052049) | RO:0002215 | GO:0036376 |
| neuromast mantle cell (CL:0000851) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| circulating cell (CL:0000080) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| small intestine BEST4+ enterocyte (CL:4047051) | subClassOf (rdfs:subClassOf) | BEST4+ enteroycte (CL:4030026) |
| group 2 innate lymphoid cell, human (CL:0001081) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| corneocyte (CL:0002153) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| transit amplifying cell (CL:0009010) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| leukocyte (CL:0000738) | RO:0002162 | NCBITaxon:7742 |
| cuboidal granulosa cell (CL:4033084) | subClassOf (rdfs:subClassOf) | granulosa cell (CL:0000501) |
| morula cell (CL:0000360) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell (CL:0002023) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| L5 sst T-Martinotti interneuron (Mmus) (CL:4023027) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| L2/3/5 fan Martinotti sst GABAergic interneuron (Mmus) (CL:4023030) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| basophil mast progenitor cell (CL:0002028) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| pvalb GABAergic cortical interneuron (CL:4023018) | subClassOf (rdfs:subClassOf) | medial ganglionic eminence derived GABAergic cortical interneuron (CL:4023069) |
| group 3 innate lymphoid cell (CL:0001071) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| intestinal enteroendocrine progenitor (CL:4052006) | subClassOf (rdfs:subClassOf) | intestinal epithelial cell (CL:0002563) |
| intestinal subserosal fibroblast (CL:4052005) | subClassOf (rdfs:subClassOf) | fibroblast (CL:0000057) |
| melanocyte (CL:0000148) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| stem cell (CL:0000034) | subClassOf (rdfs:subClassOf) | eukaryotic cell (CL:0000255) |
| CD9-positive, CD41-positive megakaryocyte cell (CL:0002027) | subClassOf (rdfs:subClassOf) | PR:000050567 |
| cuboidal granulosa cell (CL:4033084) | RO:0002207 | squamous granulosa cell (CL:4033083) |
| hematopoietic lineage restricted progenitor cell (CL:0002031) | subClassOf (rdfs:subClassOf) | eukaryotic cel... |
Contributors
dosumis, anitacaron, and 7 other contributors
Assets 44
v2024-08-16
Release Notes 2024-08-16
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2769 |
| Number of annotations on CL terms | 13003 |
| Number of synonyms | 5791 |
| Number of unique references | 1968 |
| Number of unique references in definitions | 1383 |
| Number of relationships with CL term as subject | 3725 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 494 |
Relationships removed: 38
| Subject | Predicate | Object |
|---|---|---|
| type G enteroendocrine cell (CL:0000508) | subClassOf (rdfs:subClassOf) | mucous cell of stomach (CL:0002180) |
| epithelial cell of uterus (CL:0002149) | subClassOf (rdfs:subClassOf) | endo-epithelial cell (CL:0002076) |
| luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | exocrine cell (CL:0000152) |
| duodenal goblet cell (CL:1000324) | subClassOf (rdfs:subClassOf) | duodenum glandular cell (CL:1001589) |
| epithelial cell of endometrial gland (CL:0009084) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
| folliculostellate cell (CL:0000642) | subClassOf (rdfs:subClassOf) | obsolete paracrine cell (CL:0000512) |
| endometrial ciliated epithelial cell (CL:4030040) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
| obsolete paracrine cell (CL:0000512) | subClassOf (rdfs:subClassOf) | secretory cell (CL:0000151) |
| peritubular capillary endothelial cell (CL:1001033) | subClassOf (rdfs:subClassOf) | capillary endothelial cell (CL:0002144) |
| trophoblast cell (CL:0000351) | BFO:0000050 | UBERON:0000358 |
| small intestine goblet cell (CL:1000495) | subClassOf (rdfs:subClassOf) | small intestine glandular cell (CL:1001598) |
| pancreatic goblet cell (CL:1000322) | subClassOf (rdfs:subClassOf) | pancreas exocrine glandular cell (CL:1001599) |
| epithelial cell of cervix (CL:0002535) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney venous blood vessel cell (CL:1000893) |
| surface mucosal cell of stomach (CL:0002182) | subClassOf (rdfs:subClassOf) | mucus secreting cell (CL:0000319) |
| endovascular extravillous trophoblast cell (CL:4033063) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| kidney capillary endothelial cell (CL:1000892) | subClassOf (rdfs:subClassOf) | blood vessel endothelial cell (CL:0000071) |
| goblet cell (CL:0000160) | subClassOf (rdfs:subClassOf) | glandular epithelial cell (CL:0000150) |
| goblet cell (CL:0000160) | subClassOf (rdfs:subClassOf) | mucus secreting cell (CL:0000319) |
| glandular cell of endometrium (CL:0002656) | BFO:0000050 | UBERON:0001295 |
| squamous cell of ectocervix (CL:0002244) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (CL:0000076) |
| placental villus capillary endothelial cell (CL:2000062) | BFO:0000050 | UBERON:0010005 |
| stem cell of gastric gland (CL:0002183) | subClassOf (rdfs:subClassOf) | exocrine cell (CL:0000152) |
| colon goblet cell (CL:0009039) | subClassOf (rdfs:subClassOf) | colon glandular cell (CL:1001588) |
| luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | obsolete paracrine cell (CL:0000512) |
| columnar cell of endocervix (CL:0002152) | BFO:0000050 | UBERON:0000458 |
| large intestine goblet cell (CL:1000320) | subClassOf (rdfs:subClassOf) | glandular cell of the large intestine (CL:0002658) |
| stem cell of gastric gland (CL:0002183) | subClassOf (rdfs:subClassOf) | mucous cell of stomach (CL:0002180) |
| lung goblet cell (CL:1000143) | subClassOf (rdfs:subClassOf) | lung secretory cell (CL:1000272) |
| glomerular capillary endothelial cell (CL:1001005) | subClassOf (rdfs:subClassOf) | capillary endothelial cell (CL:0002144) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney capillary endothelial cell (CL:1000892) |
| epithelial cell of uterus (CL:0002149) | BFO:0000050 | UBERON:0000995 |
| alveolar macrophage (CL:0000583) | RO:0001025 | UBERON:0002299 |
| appendix goblet cell (CL:1000327) | subClassOf (rdfs:subClassOf) | appendix glandular cell (CL:1001585) |
| mucous cell of stomach (CL:0002180) | BFO:0000050 | UBERON:0001199 |
| squamous cell of ectocervix (CL:0002244) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
| interstitial extravillous trophoblast cell (CL:4033062) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| columnar cell of endocervix (CL:0002152) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
Relationships added: 107
| Subject | Predicate | Object |
|---|---|---|
| cycling type EC enteroendocrine cell (CL:4047004) | subClassOf (rdfs:subClassOf) | type EC enteroendocrine cell (CL:0000577) |
| cycling dendritic cell (CL:4033070) | subClassOf (rdfs:subClassOf) | dendritic cell (CL:0000451) |
| type G enteroendocrine cell (CL:0000508) | subClassOf (rdfs:subClassOf) | glandular epithelial cell of stomach (CL:0002659) |
| cycling pulmonary alveolar type 2 cell (CL:4033080) | RO:0000056 | GO:0022402 |
| duodenal goblet cell (CL:1000324) | BFO:0000050 | UBERON:0008346 |
| cycling pulmonary alveolar type 2 cell (CL:4033080) | RO:0000086 | PATO:0002354 |
| fallopian tube ciliated cell (CL:4030007) | BFO:0000050 | UBERON:0003889 |
| trophoblast cell (CL:0000351) | RO:0002202 | trophectodermal cell (CL:1000274) |
| spiny VIP neuron (CL:4042014) | BFO:0000050 | UBERON:0001950 |
| cycling mononuclear phagocyte (CL:4033078) | RO:0000086 | PATO:0002354 |
| goblet cell (CL:0000160) | BFO:0000051 | GO:0098594 |
| VIP-ChAT interneuron (CL:4042015) | subClassOf (rdfs:subClassOf) | cholinergic neuron (CL:0000108) |
| cycling T cell (CL:4033069) | RO:0000056 | GO:0022402 |
| epithelial cell of uterus (CL:0002149) | BFO:0000050 | UBERON:0006955 |
| cycling macrophage (CL:4033076) | subClassOf (rdfs:subClassOf) | cycling myeloid cell (CL:4033081) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney medulla cell (CL:1000504) |
| cycling dendritic cell (CL:4033070) | subClassOf (rdfs:subClassOf) | cycling mononuclear phagocyte (CL:4033078) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | microvascular endothelial cell (CL:2000008) |
| columnar cell of endocervix (CL:0002152) | subClassOf (rdfs:subClassOf) | epithelial cell of cervix (CL:0002535) |
| cycling T cell (CL:4033069) | subClassOf (rdfs:subClassOf) | T cell (CL:0000084) |
| cycling gamma-delta T cell (CL:4033072) | subClassOf (rdfs:subClassOf) | cycling T cell (CL:4033069) |
| cycling plasma cell (CL:4047003) | subClassOf (rdfs:subClassOf) | plasma cell (CL:0000786) |
| alveolar macrophage (CL:0000583) | RO:0001025 | UBERON:8850000 |
| endometrial ciliated epithelial cell (CL:4030040) | subClassOf (rdfs:subClassOf) | multi-ciliated epithelial cell (CL:0005012) |
| cycling monocyte (CL:4033073) | subClassOf (rdfs:subClassOf) | cycling mononuclear phagocyte (CL:4033078) |
| cycling stromal cell (CL:4047001) | RO:0000086 | PATO:0002354 |
| cycling monocyte (CL:4033073) | subClassOf (rdfs:subClassOf) | monocyte (CL:0000576) |
| cycling alveolar macrophage (CL:4033077) | subClassOf (rdfs:subClassOf) | cycling macrophage (CL:4033076) |
| cycling type EC enteroendocrine cell (CL:4047004) | RO:0000086 | PATO:0002354 |
| epithelial cell of endometrial gland (CL:0009084) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
| cycling neuroblast (sensu Vertebrata) (CL:4047005) | RO:0000086 | PATO:0002354 |
| glandular cell of endometrium (CL:0002656) | BFO:0000050 | UBERON:0004811 |
| columnar cell of endocervix (CL:0002152) | BFO:0000050 | UBERON:0012252 |
| cycling glial cell (CL:4047002) | RO:0000086 | PATO:0002354 |
| cycling endothelial cell of lymphatic vessel (CL:4033079) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| cycling plasma cell (CL:4047003) | RO:0000056 | GO:0022402 |
| cycling macrophage (CL:4033076) | subClassOf (rdfs:subClassOf) | macrophage (CL:0000235) |
| squamous cell of ectocervix (CL:0002244) | BFO:0000050 | UBERON:0012251 |
| cycling mononuclear phagocyte (CL:4033078) | RO:0000056 | GO:0022402 |
| trophoblast cell (CL:0000351) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| cycling stromal cell (CL:4047001) | subClassOf (rdfs:subClassOf) | stromal cell (CL:0000499) |
| cycling type EC enteroendocrine cell (CL:404... |
Contributors
dosumis, anitacaron, and 5 other contributors
Assets 44
v2024-07-10
Release Notes 2024-07-10
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2747 |
| Number of annotations on CL terms | 12904 |
| Number of synonyms | 5740 |
| Number of unique references | 1968 |
| Number of unique references in definitions | 1355 |
| Number of relationships with CL term as subject | 3743 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 494 |
Relationships removed: 77
| Subject | Predicate | Object |
|---|---|---|
| sncg GABAergic cortical interneuron (CL:4023015) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| sncg GABAergic cortical interneuron (CL:4023015) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| kidney afferent arteriole cell (CL:1001006) | subClassOf (rdfs:subClassOf) | kidney corpuscule cell (CL:1000612) |
| bronchioalveolar stem cell (CL:0002638) | subClassOf (rdfs:subClassOf) | basal cell of epithelium of terminal bronchiole (CL:1000350) |
| bronchioalveolar stem cell (CL:0002638) | subClassOf (rdfs:subClassOf) | basal cell of epithelium of respiratory bronchiole (CL:1000351) |
| endothelial cell of Peyer's patch (CL:1000411) | subClassOf (rdfs:subClassOf) | epithelial cell of small intestine (CL:0002254) |
| respiratory epithelial cell (CL:0002368) | BFO:0000050 | UBERON:0000065 |
| basal cell of epithelium of terminal bronchiole (CL:1000350) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| basal cell of epithelium of terminal bronchiole (CL:1000350) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
| basal cell of epithelium of lobular bronchiole (CL:1000352) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| basal cell of epithelium of lobular bronchiole (CL:1000352) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
| lymph node lymphatic vessel endothelial cell (CL:0009115) | BFO:0000050 | UBERON:0001473 |
| lymph node lymphatic vessel endothelial cell (CL:0009115) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| endothelial cell of placenta (CL:0009092) | subClassOf (rdfs:subClassOf) | placental epithelial cell (CL:0002577) |
| lymphatic endothelial cell of subcapsular sinus floor (CL:0009108) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| basal cell of epithelium of trachea (CL:1000348) | subClassOf (rdfs:subClassOf) | tracheal epithelial cell (CL:0000307) |
| endothelial cell of venule of lymph node (CL:4033000) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| blood vessel endothelial cell (CL:0000071) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (CL:0000076) |
| vip GABAergic cortical interneuron (CL:4023016) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| vip GABAergic cortical interneuron (CL:4023016) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| mesothelial cell of visceral pleura (CL:1000493) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| lung neuroendocrine cell (CL:1000223) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| endothelial cell of central vein of liver (CL:4033061) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| colon endothelial cell (CL:1001572) | subClassOf (rdfs:subClassOf) | colon epithelial cell (CL:0011108) |
| kidney arteriole smooth muscle cell (CL:1001066) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| epithelial cell of alveolus of lung (CL:0010003) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| alveolar capillary type 1 endothelial cell (CL:4028002) | subClassOf (rdfs:subClassOf) | epithelial cell of alveolus of lung (CL:0010003) |
| deuterosomal cell (CL:4033044) | BFO:0000050 | UBERON:0004802 |
| endothelial cell of efferent lymphatic vessel (CL:4033006) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| epithelial cell of tracheobronchial tree (CL:0002202) | BFO:0000050 | UBERON:0007196 |
| epithelial cell of upper respiratory tract (CL:0002631) | BFO:0000050 | UBERON:0001557 |
| endothelial cell (CL:0000115) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| endothelial cell of sinusoid (CL:0002262) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| respiratory goblet cell (CL:0002370) | BFO:0000050 | UBERON:0004802 |
| lymphatic endothelial cell of trabecula (CL:0009109) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| ovarian microvascular endothelial cell (CL:2000065) | subClassOf (rdfs:subClassOf) | epithelial cell of urethra (CL:1000296) |
| lymphatic endothelial cell of medulla ceiling (CL:0009110) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| caudal ganglionic eminence derived interneuron (CL:4023064) | subClassOf (rdfs:subClassOf) | interneuron (CL:0000099) |
| obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL:4023070) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL:4023070) | subClassOf (rdfs:subClassOf) | caudal ganglionic eminence derived interneuron (CL:4023064) |
| kidney proximal convoluted tubule epithelial cell (CL:1000838) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| endothelial cell of respiratory system lymphatic vessel (CL:0009086) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| lamp5 GABAergic cortical interneuron (CL:4023011) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| lamp5 GABAergic cortical interneuron (CL:4023011) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| fenestrated endothelial cell (CL:0000666) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
| epithelial cell of proximal tubule segment 3 (CL:4030011) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| glomerular endothelial cell (CL:0002188) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| glomerular endothelial cell (CL:0002188) | subClassOf (rdfs:subClassOf) | glomerular cell (CL:1000746) |
| kidney blood vessel cell (CL:1000854) | subClassOf (rdfs:subClassOf) | renal cortical epithelial cell (CL:0002584) |
| epithelial cell of lower respiratory tract (CL:0002632) | BFO:0000050 | UBERON:0001558 |
| brush border epithelial cell (CL:0000239) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
| epithelial cell of proximal tubule segment 1 (CL:4030009) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| kidney efferent arteriole cell (CL:1001009) | subClassOf (rdfs:subClassOf) | kidney corpuscule cell (CL:1000612) |
| basal cell of epithelium of respiratory bronchiole (CL:1000351) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| basal cell of epithelium of respiratory bronchiole (CL:1000351) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
| endothelial cell of high endothelial venule (CL:0002652) | subClassOf (rdfs:subClassOf) | columnar/cuboidal epithelial cell (CL:0000075) |
| respiratory suprabasal cell (CL:4033048) | BFO:0000050 | UBERON:0004802 |
| pulmonary alveolar type 2 cell (CL:0002063) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| lung endothelial cell (CL:1001567) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| corneal endothelial cell (CL:0000132) | subClassOf (rdfs:subClassOf) | neurecto-epithelial cell (CL:0000710) |
| dermis microvascular lymphatic vessel endothelial cell (CL:2000041) | BFO:0000050 | UBERON:0008339 |
| kidney venous system smooth muscle cell (CL:1001068) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| endothelial cell of hepatic portal vein (CL:0009094) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| kidney artery smooth muscle cell (CL:1001064) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| epithelial cell of proximal tubule segment 2 (CL:4030010) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| epithelial cell of proximal tubule (CL:0002306) | subClassOf (rdfs:subClassOf) | brush border epithelial cell (CL:0000239) |
| squamous endothelial cell (CL:0002653) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (... |
Contributors
cmungall, dosumis, and 6 other contributors
Assets 44
v2024-05-15
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2743 |
| Number of annotations on CL terms | 12857 |
| Number of synonyms | 5718 |
| Number of unique references | 1965 |
| Number of unique references in definitions | 1335 |
| Number of relationships with CL term as subject | 7449 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 493 |
What's Changed
- Adding editor's ID range by @JABelfiore in #2332
- Fixes #2324 synonym terminal Schwann cell by @JABelfiore in #2334
- NTR protoplasmic astrocytes fibrous astrocytes interlaminar astrocytes by @AvolaAmg in #2331
- Add new CL editor ID range by @Caroline-99 in #2336
- Fixes #2335 typo brush cell of trachebronchial tree by @Caroline-99 in #2340
- Add Jorstad paper as a reference to cortical neuron CL terms by @AvolaAmg in #2338
- Fixes #2315 revise myoepithelial cell mesodermal origin by @aleixpuigb in #2341
- Fixes #1562 merge foreskin melanocyte and melanocyte of foreskin by @Caroline-99 in #2353
- Re-classify 'R7 photoreceptor cell' as part of an ommatidium. by @gouttegd in #2347
- Add proper mappings management by @gouttegd in #2361
- Fixes #2288 NTR preplasmablast by @aleixpuigb in #2356
- Building the ZFA mapping set must depend on 'all_robot_plugins'. by @gouttegd in #2363
- Automatically generate text definitions from logical definitions by @gouttegd in #2349
- Update relations_guide.md by @dosumis in #2364
- Update ODK version used in workflows. by @gouttegd in #2368
- Change text definition intratelencepalic-projecting glutamatergic neurons in CL by @AvolaAmg in #2351
- Refreshing imports in preparation of CL release by @aleixpuigb in #2371
- CL release v2024-05-15 by @aleixpuigb in #2372
New Contributors
- @JABelfiore made their first contribution in #2332
- @Caroline-99 made their first contribution in #2336
Full Changelog: v2024-04-05...v2024-05-15
Contributors
dosumis, gouttegd, and 4 other contributors
Assets 44
v2024-04-05
What's Changed
- Fixes #2282 typo text def neural crest fibroblast by @AvolaAmg in #2286
- Add ID range for new editor by @aleixpuigb in #2287
- 2283_Cell_types_with_missing_definition by @AvolaAmg in #2289
- Fixes #2290 2290_Kidney_blood_vessel_cell_revise_logical_definition by @AvolaAmg in #2291
- Reduce words on "merge-term" issue template by @anitacaron in #2302
- Update files for ODK 1.5 by @matentzn in #2299
- Making camera eye photoreceptor cell part of retina. by @cmungall in #2248
- NTR dermal chromatophore by @paulacalipho in #2308
- Use a dedicated token for the Ontobot workflow. by @gouttegd in #2314
- New Term Request TAC3-Positive interneurons by @AvolaAmg in #2303
- New Term Request TAC3-positive medium spiny neurons by @AvolaAmg in #2304
- Fixes #2318 edit myoepithelial cell of mammary gland by @aleixpuigb in #2323
- NTR-border-associated-macrophage by @AvolaAmg in #2319
- Refresh imports in preparation of CL release 2024-04-05 by @aleixpuigb in #2325
- CL release v2024-04-05 by @aleixpuigb in #2326
New Contributors
Full Changelog: v2024-02-13...v2024-04-05
Contributors
cmungall, anitacaron, and 5 other contributors
Assets 43
v2024-02-13
v2024-02-13
Detailed differences for this release can be viewed in the diff file.
What's Changed
- Addresses #2259 NTR placental terms by @aleixpuigb in #2262
- CellXGene referred cells tagged by @hkir-dev in #2267
- Fix broken link to main release file by @anitacaron in #2263
- Fixes #2251 obsolete increased nucleus size by @aleixpuigb in #2268
- Fixes #2272 URL are not IRI for obsoleted terms by @aleixpuigb in #2273
- added lateral ganglionic eminence derived neuron by @shawntanzk in #2275
- Refresh imports in preparation of CL release v2024-02-13 by @aleixpuigb in #2278
- Fix obsolete object property bug by @aleixpuigb in #2279
- CL release v2024-02-13 by @aleixpuigb in #2280
New Contributors
Full Changelog: v2024-01-04...v2024-02-13
Contributors
anitacaron, hkir-dev, and 2 other contributors
Assets 43
v2024-01-04
v2024-01-04
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/b517b5d8195fc4af2faed5f2a9e5436d4946c4d7/src/ontology/diffs/cl-diff.md
What's Changed
- Fixes #2244 keratocyte text definition by @aleixpuigb in #2249
- Addresses #2242 NTR endothelial cell of central vein of liver by @aleixpuigb in #2243
- Refresh imports 2024-01-04 by @aleixpuigb in #2257
- CL release 2024-01-04 by @aleixpuigb in #2258
Full Changelog: v2023-12-05...v2024-01-04
Contributors
aleixpuigb
Assets 43
v2023-12-05
v2023-12-05
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/286560fd1a9f672bc44ae1846fc2f136c986bee9/src/ontology/diffs/cl-diff.md
What's Changed
- Addresses #1149 obsolete 'barrier epithelial cell' and 'seminal flui… in #2206
- Add slim coverage check running on local (branch) copy CL by @ubyndr in #2182
- Fixes #2212 class hierarchy 'peritubular capillary endothelial cell' by @aleixpuigb in #2213
- Fixes #2209 relabel fat cell by @aleixpuigb in #2210
- Adding
ontobot-change-agentto create PRs based on appropriate Issues. by @hrshdhgd in #2211 - Update README.md by @dosumis in #2215
- Fixes #1266 populate mononuclear phagocyte by @aleixpuigb in #2208
- Addresses #2219 Revise logical definition for 'kidney collecting duct… in #2220
- Uncommented crucial line in
ontobot.ymlby @hrshdhgd in #2226 - Addresses #2203 [NTR-cxg] 'L5/6 near-projecting glutamatergic neuron' in #2222
- Update README.md by @dosumis in #2218
- Addresses #2224 Edit 'epithelial cell of lacrimal duct' in #2229
- Addresses #2030 Make kidney subset in #2230
- Check for the phrase
Hey ontobotbefore running the workflow by @hrshdhgd in #2228 - File clean up fix for generic_coverage.py by @ubyndr in #2223
- Update inadvertently added contributor annotations in #2232
- Addresses #2202 NTR 'L6 IT Car3 glutamatergic neuron' in #2234
- Fix duplicated cross-references. by @gouttegd in #2236
- add new term 'mesenchymal stem cell of apical papilla by @paulacalipho in #2214
- Refresh imports in preparation for CL release by @aleixpuigb in #2237
- CL release 2023-12-05 by @aleixpuigb in #2238
New Contributors
Full Changelog: v2023-10-19...v2023-12-05
Contributors
dosumis, paulacalipho, and 4 other contributors
Assets 43
v2023-10-19
v2023-10-19
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/64876e247f17994f617c734b0eeb976a1a1afcb2/src/ontology/diffs/cl-diff.md
Note that http://purl.obolibrary.org/obo/cl#abbreviation abbreviation has been replaced by http://purl.obolibrary.org/obo/OMO_0003000 abbreviation.
What's Changed
- Standardised annotation property: abbreviation by @bvarner-ebi in #2159
- Deleted reports folder from root by @bvarner-ebi in #2161
- Edited subclasses of 'kidney cell' by @bvarner-ebi in #2163
- Added new term 'TCR-positive macrophage' by @bvarner-ebi in #2162
- Fixed unsat for syncytiotrophoblast cell by @aleixpuigb in #2165
- Added new term onychocyte by @aleixpuigb in #2168
- Edited Hofbauer cell by @aleixpuigb in #2170
- Added RO:0002100 ‘has soma location’ to get_scope_query method by @ubyndr in #2174
- Added new terms for region-agnostic L2/3-6 intratelencephalic projecting glutamatergic cortical neurons (by layer) by @bvarner-ebi in #2181
- Updated reference term for general upper level slim by @aleixpuigb in #2186
- Edited PURL for abbreviation in editing_guidelines.md by @bvarner-ebi in #2188
- Added new term 'ureteric bud cell' by @bvarner-ebi in #2185
- Changed
foaf:depicted_bytofoaf:depictionby @anitacaron in #2184 - Added new terms for lactocyte subtypes by @aleixpuigb in #2189
- Edited 'chandelier cell' by @bvarner-ebi in #2190
- Added new terms for mammary luminal epithelial cells by @aleixpuigb in #2187
- Refreshed imports 10-2023 by @bvarner-ebi in #2192
- Edited and relabelled 'mammary alveolar cell' to lactocyte by @aleixpuigb in #2196
- Removed CARO import by @anitacaron in #2199
- Edited lactocyte textual definition by @aleixpuigb in #2201
- Removed
oortstep from the release pipeline by @anitacaron in #2204 - CL release 2023-10-19 by @bvarner-ebi in #2205
Full Changelog: v2023-09-21...v2023-10-19
Contributors
anitacaron, ubyndr, and aleixpuigb