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Laminin enterocyte of colon #2609

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Laminin enterocyte of colon #2609

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d8ce6fb
import
JABelfiore Sep 24, 2024
616718a
merged import
JABelfiore Sep 24, 2024
ea4bcff
def, refs
JABelfiore Sep 24, 2024
ed39985
Merge branch 'master' into 2583-ntr-laminin-enterocyte-of-colon
JABelfiore Sep 26, 2024
a568169
Merge branch 'master' into 2583-ntr-laminin-enterocyte-of-colon
JABelfiore Oct 22, 2024
2603c50
name change, subclass update
JABelfiore Oct 22, 2024
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17 changes: 14 additions & 3 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3080,6 +3080,7 @@ Declaration(Class(obo:CL_4047011))
Declaration(Class(obo:CL_4047012))
Declaration(Class(obo:CL_4047018))
Declaration(Class(obo:CL_4047019))
Declaration(Class(obo:CL_4047021))
Declaration(Class(obo:CL_4047051))
Declaration(Class(obo:CL_4047052))
Declaration(Class(obo:CL_4047101))
Expand Down Expand Up @@ -3123,6 +3124,7 @@ Declaration(Class(obo:GO_0036053))
Declaration(Class(obo:GO_0036376))
Declaration(Class(obo:GO_0042599))
Declaration(Class(obo:GO_0044316))
Declaration(Class(obo:GO_0045428))
Declaration(Class(obo:GO_0070278))
Declaration(Class(obo:GO_0070483))
Declaration(Class(obo:GO_0097729))
Expand Down Expand Up @@ -3338,7 +3340,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")

AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")

# Annotation Property: obo:IAO_0000700 (has ontology root term)
# Annotation Property: obo:IAO_0000700 (preferred_root)

AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")

Expand Down Expand Up @@ -3432,11 +3434,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")

AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")

# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)
# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")

# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)
# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")

Expand Down Expand Up @@ -32616,6 +32618,15 @@ AnnotationAssertion(terms:date obo:CL_4047019 "2024-09-24T12:11:09Z"^^xsd:dateTi
AnnotationAssertion(rdfs:label obo:CL_4047019 "early enterocyte"@en)
EquivalentClasses(obo:CL_4047019 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013740)))

# Class: obo:CL_4047021 (laminin colonocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15652360") obo:IAO_0000115 obo:CL_4047021 "An enterocyte located in the epithelium of the colon. This cell expresses and interacts with specific laminin isoforms, particularly laminin-332 (composed of α3, β3, and γ2 chains) and laminin-511 (composed of α5, β1, and γ1 chains). Laminin enterocytes of the colon are attached to the basement membrane via hemidesmosomes containing α6β4 integrin, which binds to laminins. This cell exhibits differential expression of laminin chains along the crypt-surface axis.")
AnnotationAssertion(terms:contributor obo:CL_4047021 <https://orcid.org/0009-0005-7919-4905>)
AnnotationAssertion(terms:date obo:CL_4047021 "2024-09-24T14:36:31Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4047021 "laminin colonocyte"@en)
SubClassOf(obo:CL_4047021 obo:CL_1000347)
SubClassOf(obo:CL_4047021 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013740))

# Class: obo:CL_4047051 (small intestine BEST4+ enterocyte)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24223998") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047051 "An enterocyte of the human small intestine expressing bestrophin-4 (BEST4) calcium-activated ion channels. These enterocytes have a disinctive transcriptomic profile and are scattered through the small intestine epithelium.")
Expand Down
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