new release draft

obophenotype · Feb 2, 2016 · dd3f78b · dd3f78b
1 parent da6c529
commit dd3f78b
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Showing 32 changed files with 206,091 additions and 29,275 deletions.
diff --git a/cl-basic.obo b/cl-basic.obo
diff --git a/cl-basic.owl b/cl-basic.owl
diff --git a/cl.obo b/cl.obo
diff --git a/cl.owl b/cl.owl
diff --git a/imports/chebi_import.owl b/imports/chebi_import.owl
@@ -1,14 +1,11 @@
 <?xml version="1.0"?>
-<rdf:RDF xmlns="http://purl.obolibrary.org/obo/cl/imports/imports/chebi_import.owl#"
-     xml:base="http://purl.obolibrary.org/obo/cl/imports/imports/chebi_import.owl"
-     xmlns:dc="http://purl.org/dc/elements/1.1/"
-     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/cl/imports/chebi_import.owl#"
+     xml:base="http://purl.obolibrary.org/obo/cl/imports/chebi_import.owl"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
-     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cl/imports/imports/chebi_import.owl">
-        <dc:source rdf:resource="http://purl.obolibrary.org/obo/chebi/119/chebi.owl"/>
-    </owl:Ontology>
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cl/imports/chebi_import.owl"/>
 
 
 
@@ -237,5 +234,5 @@
 
 
 
-<!-- Generated by the OWL API (version 0.2.1-SNAPSHOT) http://owlapi.sourceforge.net -->
+<!-- Generated by the OWL API (version 0.0.1-SNAPSHOT) http://owlapi.sourceforge.net -->
 
diff --git a/imports/go_import.owl b/imports/go_import.owl
@@ -1,14 +1,11 @@
 <?xml version="1.0"?>
 <rdf:RDF xmlns="http://purl.obolibrary.org/obo/cl/imports/go_import.owl#"
      xml:base="http://purl.obolibrary.org/obo/cl/imports/go_import.owl"
-     xmlns:dc="http://purl.org/dc/elements/1.1/"
-     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
-     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cl/imports/go_import.owl">
-        <dc:source rdf:resource="http://purl.obolibrary.org/obo/go/releases/2015-10-29/go.owl"/>
-    </owl:Ontology>
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cl/imports/go_import.owl"/>
 
 
 
@@ -142,7 +139,6 @@
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0010927"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022412"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0033363"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044702"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0070925"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_1902589"/>
     </owl:Class>
@@ -1292,7 +1288,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0003008">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">system process</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044707"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0032501"/>
     </owl:Class>
 
 
@@ -1368,24 +1364,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0005319 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0005319">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lipid transporter activity</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022892"/>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0005342 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0005342">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organic acid transmembrane transporter activity</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022891"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0005488 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0005488">
@@ -1972,15 +1950,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0007154 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0007154">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cell communication</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044763"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0007155 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0007155">
@@ -2009,16 +1978,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0007267 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0007267">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cell-cell signaling</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0007154"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044700"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0007269 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0007269">
@@ -2046,7 +2005,6 @@
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">germ cell development</rdfs:label>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003006"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022412"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044702"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0048468"/>
     </owl:Class>
 
@@ -2068,7 +2026,6 @@
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003006"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022412"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0035082"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044702"/>
     </owl:Class>
 
 
@@ -2140,15 +2097,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0008028 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008028">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">monocarboxylic acid transmembrane transporter activity</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0046943"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0008104 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008104">
@@ -2667,26 +2615,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0015125 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0015125">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bile acid transmembrane transporter activity</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0005319"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008028"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_1901618"/>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0015126 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0015126">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">canalicular bile acid transmembrane transporter activity</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0015125"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0015669 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0015669">
@@ -2913,7 +2841,7 @@
     <!-- http://purl.obolibrary.org/obo/GO_0016023 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016023">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cytoplasmic membrane-bounded vesicle</rdfs:label>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cytoplasmic, membrane-bounded vesicle</rdfs:label>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0031410"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0031988"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0043231"/>
@@ -3029,15 +2957,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0017144 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0017144">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">drug metabolic process</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044237"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0017145 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0017145">
@@ -3204,6 +3123,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0022412">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cellular process involved in reproduction in multicellular organism</rdfs:label>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044702"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044763"/>
     </owl:Class>
 
@@ -3222,7 +3142,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0022602">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ovulation cycle process</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044699"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044702"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0048511"/>
     </owl:Class>
 
@@ -3391,7 +3311,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0030141">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">secretory granule</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016023"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0099503"/>
     </owl:Class>
 
 
@@ -3630,9 +3550,9 @@
     <!-- http://purl.obolibrary.org/obo/GO_0030529 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0030529">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ribonucleoprotein complex</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">intracellular ribonucleoprotein complex</rdfs:label>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044424"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_1990904"/>
     </owl:Class>
 
 
@@ -4057,6 +3977,7 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032844">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">regulation of homeostatic process</rdfs:label>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0050789"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0065008"/>
     </owl:Class>
 
 
@@ -4474,15 +4395,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0038001 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0038001">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">paracrine signaling</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0007267"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0038023 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0038023">
@@ -5861,16 +5773,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0046943 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0046943">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">carboxylic acid transmembrane transporter activity</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0005342"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008514"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0048002 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048002">
@@ -5914,7 +5816,6 @@
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sperm capacitation</rdfs:label>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003006"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022412"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044702"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0048469"/>
     </owl:Class>
 
@@ -6458,7 +6359,6 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0050878">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">regulation of body fluid levels</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044707"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0065008"/>
     </owl:Class>
 
@@ -7821,7 +7721,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0098754">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">detoxification</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008152"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
     </owl:Class>
 
 
@@ -7874,6 +7774,15 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GO_0099503 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0099503">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">secretory vesicle</rdfs:label>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016023"/>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_1901135 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_1901135">
@@ -7980,15 +7889,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_1901618 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_1901618">
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organic hydroxy compound transmembrane transporter activity</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022857"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_1902105 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_1902105">
@@ -8112,6 +8012,7 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_1903046">
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">meiotic cell cycle process</rdfs:label>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0022402"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044702"/>
     </owl:Class>
 
 
@@ -8188,6 +8089,15 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GO_1990904 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_1990904">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ribonucleoprotein complex</rdfs:label>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0032991"/>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_2000026 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_2000026">
@@ -8258,5 +8168,5 @@
 
 
 
-<!-- Generated by the OWL API (version 0.2.2-SNAPSHOT) http://owlapi.sourceforge.net -->
+<!-- Generated by the OWL API (version 0.0.1-SNAPSHOT) http://owlapi.sourceforge.net -->
 
diff --git a/imports/pato_import.owl b/imports/pato_import.owl
@@ -1,14 +1,11 @@
 <?xml version="1.0"?>
 <rdf:RDF xmlns="http://purl.obolibrary.org/obo/cl/imports/pato_import.owl#"
      xml:base="http://purl.obolibrary.org/obo/cl/imports/pato_import.owl"
-     xmlns:dc="http://purl.org/dc/elements/1.1/"
-     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
-     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cl/imports/pato_import.owl">
-        <dc:source rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2015-04-09/pato.owl"/>
-    </owl:Ontology>
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cl/imports/pato_import.owl"/>
 
 
 
@@ -541,5 +538,5 @@
 
 
 
-<!-- Generated by the OWL API (version 0.2.2-SNAPSHOT) http://owlapi.sourceforge.net -->
+<!-- Generated by the OWL API (version 0.0.1-SNAPSHOT) http://owlapi.sourceforge.net -->