Merge pull request #305 from obophenotype/NTR_age_onset_panc_duct_adeno

Added new 'age of onset' term
obophenotype · Dec 7, 2023 · d3bbe46 · d3bbe46
2 parents 169cae0 + b041611
commit d3bbe46
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Showing 4 changed files with 11 additions and 4 deletions.
diff --git a/src/ontology/components/obsoletes.owl b/src/ontology/components/obsoletes.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/components/obsoletes.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2023-10-10/components/obsoletes.owl>
-Annotation(owl:versionInfo "2023-10-10")
+<http://purl.obolibrary.org/obo/oba/releases/2023-12-05/components/obsoletes.owl>
+Annotation(owl:versionInfo "2023-12-05")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000037>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000039>))

diff --git a/src/ontology/components/synonyms.owl b/src/ontology/components/synonyms.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/components/synonyms.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2023-10-10/components/synonyms.owl>
-Annotation(owl:versionInfo "2023-10-10")
+<http://purl.obolibrary.org/obo/oba/releases/2023-12-05/components/synonyms.owl>
+Annotation(owl:versionInfo "2023-12-05")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002546>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002565>))

diff --git a/src/patterns/data/default/disease_onset.tsv b/src/patterns/data/default/disease_onset.tsv
@@ -41,3 +41,4 @@ OBA:2040167		MONDO:0000481	cervical dystonia
 OBA:2020000		MONDO:0000001	disease or disorder
 OBA:2050099		MONDO:0005351	anorexia nervosa
 OBA:2050327		MONDO:0005575	colorectal cancer
+OBA:2050353		MONDO:0005184 	pancreatic ductal adenocarcinoma
diff --git a/src/patterns/pattern.owl b/src/patterns/pattern.owl
@@ -33,11 +33,14 @@ Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000052>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000087>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002233>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002314>))
+Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000112>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
 Declaration(AnnotationProperty(<http://purl.org/dc/terms/contributor>))
 Declaration(AnnotationProperty(<http://purl.org/dc/terms/title>))
+Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasDbXref>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym>))
+Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym>))
 
 
 
@@ -95,12 +98,15 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/oba/patterns/entity_attribute.
 
 # Class: <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> ('quality' of 'thing' in 'thing')
 
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "http://www.w3.org/2001/XMLSchema#string"^^xsd:string)
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "The 'quality' of a 'thing' when measured in 'thing'."^^xsd:string)
 AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "xsd:anyURI"^^xsd:string)
 AnnotationAssertion(<http://purl.org/dc/terms/title> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "entity_attribute_location"^^xsd:string)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "xsd:string"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "xsd:anyURI"^^xsd:string)
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute_location"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "'thing' 'thing' 'quality'"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "xsd:string"^^xsd:string)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "xsd:string"^^xsd:string)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> "'quality' of 'thing' in 'thing'"^^xsd:string)
 EquivalentClasses(<http://purl.obolibrary.org/obo/oba/patterns/entity_attribute_location.yaml> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(owl:Thing ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> owl:Thing)))))