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Refactor development guide #874

Merged
merged 11 commits into from
Dec 2, 2024
2 changes: 2 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,8 @@ and this project uses [Semantic Versioning](https://semver.org/spec/v2.0.0.html)

### Changed

- Refactored our development guide to clarify development environment setup and how to run tests
([@jhkennedy](https://github.com/jhkennedy))
- Use built-in `assert` statements instead of `unittest` assertions in
integration tests ([#743](https://github.com/nsidc/earthaccess/issues/743))
([@chuckwondo](https://github.com/chuckwondo))
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193 changes: 142 additions & 51 deletions docs/contributing/development.md
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Expand Up @@ -11,22 +11,97 @@
In order to develop new features or fix bugs etc. we need to set up a virtual
environment and install the library locally.

## Quickstart development
## Development environment setup

The fastest way to start with development is to use nox. If you don't have nox,
you can use `pipx run nox` to run it without installing, or `pipx install nox`.
If you don't have pipx (pip for applications), then you can install with
`pip install pipx` (the only case were installing an application with regular
pip is reasonable). If you use macOS, then pipx and nox are both in brew, use
`brew install pipx nox`.

To use, run `nox` without any arguments. This will run the type check and unit
test "sessions" (tasks) using your local (and active) Python version.
Nox handles everything for you, including setting up a temporary virtual
environment for each run.
There are a few options for setting up a development environment; you can use Python's `venv`, use `conda`/`mamba`, or _not_
manage one yourself and use `pipx` to run tests and build docs with `nox`.

You can see all available sessions with `nox --list`:
* If you're a Windows user, you'll likely want to set up an environment yourself with `conda`/`mamba`.
* If you're working in a JupyterHub, you'll likely want to set up an environment yourself with `conda`/`mamba`.
* If you're using an IDE like VS Code or PyCharm, you'll likely want to set up an environment yourself with `venv` or `conda`/`mamba`.
* If you're using a plain text editor and don't know how to or want to manage a virtual environment, you'll likely want to start with `pipx`.

=== "`venv`"
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`venv` is a virtual environment manager that's built into Python.

Create and activate the development environment with:

```bash
python -m venv .venv
source .venv/bin/activate
```

Then install `earthaccess` into the environment in editable mode with the optional development dependencies:

```bash
python -m pip install --editable ".[dev,test,docs]"
```


=== "`conda`/`mamba`"

`conda` and `mamba` are open-source package and environment managers that are language and platform agnostic.
`mamba` is a newer and faster re-implementation of `conda` -- you can use either `conda` or `mamba`
in the commands below.

After you have followed [the `conda`/`mamba` installation instructions](https://docs.conda.io/projects/conda/en/latest/user-guide/install/index.html) (we recommend Miniforge), you can create and activate the development environment with:

```bash
mamba env update -f environment.yml
mamba activate earthaccess
```

This will ensure the `earthaccess` environment exists and is up-to-date, and active it. The `earthaccess` package will
be installed into the environment in editable mode with the optional development dependencies.

??? note "2024-09-23: Conda environment name changed from `earthaccess-dev` -> `earthaccess`"

On Sept. 23, 2024, the name of the conda environment changed from `earthaccess-dev` to `earthacess` to align with
community best practices. If you have an `earthaccess-dev` environment, we recommend deleting it and creating a new one.
From the repository root, you can do that with these commands:

```bash
mamba env update -f environment.yml
mamba activate earthaccess
mamba env remove -n earthaccess-dev
```

=== "`pipx`+`nox`"

`pipx` is a tool to help you install and run end-user applications written in Python and `nox` is Python application
that automates testing in multiple Python environments. By using `pipx` to install `nox` and using `nox` to run common development tasks, some users can avoid the need to set up and manage a full development environment.
Once you have [installed `pipx` following the official instructions](https://github.com/pypa/pipx?tab=readme-ov-file#install-pipx), you can either run `nox` without installing it via:

```bash
pipx run nox [NOX_ARGS]
```

or install `nox` into an isolated environment and run it with:

```bash
pipx install nox
nox [NOX_ARGS]
```

`nox` handles everything for you, including setting up a temporary virtual environment for each task (e.g. running tests, building docs, etc.) you need to run.

Now that your development environment is set up, you can run the tests.

## Running tests

We recommend using `nox` to run the various "sessions" (`nox`'s term for tasks) provided by `earthaccess`. To use, run `nox` without
any arguments:

```bash
nox
```

This will run the type check and unit test sessions using your local (and active) Python
version. `nox` handles everything for you, including setting up a temporary virtual environment for each run.

You can see all available sessions with `nox --list`:
```
$ nox --list
Sessions defined in earthaccess/noxfile.py:
Expand All @@ -41,8 +116,7 @@ Sessions defined in earthaccess/noxfile.py:
sessions marked with * are selected, sessions marked with - are skipped.
```

You can also run individual tasks (_sessions_ in `nox` parlance, hence the `-s`
option below), like so:
You can also run individual sessions like so:

```bash
nox -s integration-tests
Expand All @@ -54,57 +128,74 @@ and pass options to the underlying session like:
nox -s integration-tests -- [ARGS]
```

!!! tip

In order to run integration tests locally, you must set the
environment variables `EARTHDATA_USERNAME` and `EARTHDATA_PASSWORD` to your
username and password, respectively, of your
[NASA Earthdata](https://urs.earthdata.nasa.gov/) account (registration is
free).
!!! info "Important"

In order to run integration tests locally, you must set the environment variables `EARTHDATA_USERNAME` and
`EARTHDATA_PASSWORD` to the username and password of your [NASA Earthdata](https://urs.earthdata.nasa.gov/)
account, respectively (registration is free).

### IDE setup

## Manual development environment setup
Integrated development environments (IDEs) like VS Code and PyCharm provide powerful refactoring, testing, and
debugging integrations, but they typically don't understand "task runners" like `nox` and won't know how to launch
debugging or testing sessions connected to the provided integrations.

While `nox` is the fastest way to get started, you will likely need a full
development environment for making code contributions, for example to test in a
REPL, or to resolve references in your favorite IDE. This development
environment also includes `nox`. You can create it with `venv`, `conda`, or `mamba`.
Fortunately, if you've set up a development environment you should be able to call the underlying testing tools
(e.g., `mypy` and `pytest`) directly, or run them via your IDE integrations. To understand how `nox` is running the
underlying tools in each test session you can read the `noxfile.py` in the repository root, or, run all the test directly
in your development environment like:

=== "`venv`"

`venv` is a virtual environment manager that's built into Python.
```bash
nox -fb none --no-install
```

Create and activate the development environment with:
This will force `nox` to not use an environment backend (will just use the active environment) and not attempt to install
any packages. When `nox` runs, it will describe the commands it executes:

```bash
python -m venv .venv
source .venv/bin/activate
```

Then install `earthaccess` into the environment in editable mode with the optional development dependencies:
```
$ nox -fb none --no-install
nox > Running session typecheck
nox > mypy
Success: no issues found in 35 source files
nox > Session typecheck was successful.
nox > Running session tests
nox > pytest tests/unit -rxXs
========================================== test session starts ==========================================
...
==================================== 43 passed, 1 xfailed in 24.01s =====================================
nox > Session tests was successful.
nox > Ran multiple sessions:
nox > * typecheck: success
nox > * tests: success
```

```bash
python -m pip install --editable ".[dev,test,docs]"
```
Note these lines in particular:

```
nox > Running session typecheck
nox > mypy
nox > Running session tests
nox > pytest tests/unit -rxXs
```

=== "`conda`/`mamba`"
So to reproduce the typecheck session all you have to do is run `mypy` in your development environment. Similarly, reproducing
the unit tests is running `pytest test/unit -rxXs`.

`conda` and `mamba` are open-source package and environment managers that are language and platform agnostic.
`mamba` is a newer and faster re-implementation of `conda` -- you can use either `conda` or `mamba`
in the commands below.
Since we're not doing any complicated configuration or setting complicated arguments to pytest, simply hitting the "play" button
for a pytest in your IDE should work once you've configured it to use your development environment.

Create and activate the development environment with:
!!! info "Important"

Currently, our integration tests are *flakey* and a small number of random failures are expected. When the integration
test suite runs, it may return a status code of 99 if the failure rate was less than an "acceptable" threshold. Since
any non-zero status code is considered an error, your console and/or IDE will consider this a failure by default.
`nox`, however, knows about this special status code and will report a success. To get pytest or your IDE to match
this behavior, you can modify the special status code to be zero with the `EARTHACCESS_ALLOWABLE_FAILURE_STATUS_CODE`
evnironment variable:
```bash
mamba env update -f environment.yml
mamba activate earthaccess
export EARTHACCESS_ALLOWABLE_FAILURE_STATUS_CODE=0
```

This will update (or create if missing) the `earthaccess` environment and active it. The `earthaccess` package will
be installed into the environment in editable mode with the optional development dependencies.

## Managing Dependencies

If you need to add a new dependency, edit `pyproject.toml` and insert the
Expand Down Expand Up @@ -134,14 +225,14 @@ Since `python-cmr` exposes the `cmr` package, the stubs appear under `stubs/cmr`
To work on documentation locally, we provide a script that will automatically re-render the docs when you make changes:

```
nox -s serve_docs
nox -s serve-docs
```

MkDocs does not support incremental rebuilds and will execute every Jupyter Notebook every time it builds a new
version of the site, which can be quite slow. To speed up the build, you can pass MkDocs these options:

```
nox -s serve_docs -- --dirty --no-strict
nox -s serve-docs -- --dirty --no-strict
```

!!! warning
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7 changes: 7 additions & 0 deletions docs/css/styles.css
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@@ -1,2 +1,9 @@
.details .open {
}

.tabbed-set {
padding: 5px;
border: 1px lightgrey;
border-radius: 2px;
border-style: solid;
}