Replay Simulations

Code for Review illustration in Wittkuhn, Chien, McMaster, Schuck

Run

Run replay_sim.R to run the simulations.

Warning: It takes between 10 to 20 minutes to execute (depending on OS).

Citation

Wittkuhn, L., Chien, S., Hall-McMaster, S., and Schuck, N. W. (2021). Replay in minds and machines. Neuroscience & Biobehavioral Reviews, 129:367–388. doi: 10.1016/j.neubiorev.2021.08.002

Build

Make

You can also run the code using make by running the following command.

make all

Docker

We've created a Docker container (see Dockerfile) and uploaded it to dockerhub.

Running the container

You can run the make command inside the Docker container:

docker run --rm -v $PWD:/home lennartwittkuhn/replaysim-wittkuhn-etal2021 /bin/sh -c "cd /home; make all"

The figures created by the simulation can be retrieved as Build Artifacts. Search the latest executed workflow and Build Artifacts here to download the figures.

Building the container

The commands below were used by us to create the container. They are listed here for documentation purposes.

docker login

docker build -t lennartwittkuhn/replaysim-wittkuhn-etal2021:latest .

docker push lennartwittkuhn/replaysim-wittkuhn-etal2021:latest