Merge pull request #56 from nmfs-opensci/eeholmes-patch-1

Update Dockerfile

draft_images/test/Dockerfile

@@ -1,42 +1,15 @@
-FROM ghcr.io/nmfs-opensci/py-rocket-2:732c273a2ba2
+FROM ghcr.io/nmfs-opensci/py-rocket-base:latest
 
 RUN echo ${PATH}
 
 USER root
-COPY . /tmp2/
-RUN /pyrocket_scripts/install-conda-packages.sh /tmp2/environment.yml || echo "install-conda-packages.sh failed" || true
-RUN /pyrocket_scripts/install-r-packages.sh /tmp2/install.R || echo "install-r-package.sh failed" || true
-RUN /pyrocket_scripts/install-pip-packages.sh /tmp2/requirements.txt || echo "install-pip-packages.sh failed" || true
-RUN /pyrocket_scripts/install-apt-packages.sh /tmp2/apt.txt || echo "install-apt-packages.sh failed" || true
-RUN /pyrocket_scripts/install-desktop.sh /tmp2/Desktop|| echo "setup-desktop.sh failed" || true
-RUN /pyrocket_scripts/run-postbuild.sh /tmp2/postBuild|| echo "run-postbuild.sh failed" || true
-RUN /pyrocket_scripts/setup-start.sh /tmp2/start || echo "setup-start.sh failed" || true
-RUN rm -rf /tmp2
-USER ${NB_USER}
-
-COPY apt.txt apt.txt
-RUN rm apt.txt || true
 
-USER root
-# install the geospatial libraries and R spatial; the rocket script are part of py-rocket-base
-RUN PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin && \
-    /rocker_scripts/install_geospatial.sh
-
-# Install cwutils
 RUN cd /tmp && \
-    wget https://www.star.nesdis.noaa.gov/socd/coastwatch/cwf/cwutils-4_0_0_198-linux-x86_64.tar.gz && \
-    tar -zxf cwutils-4_0_0_198-linux-x86_64.tar.gz && \
-    rm -rf cwutils-4_0_0_198-linux-x86_64.tar.gz
-ENV PATH=${PATH}:/tmp/cwutils_4.0.0.198/bin
-ENV MANPATH=${MANPATH}:/tmp/cwutils_4.0.0.198/doc/man
-ENV INSTALL4J ADD VM PARAMS=-Dsun.java2d.uiScale=2.0
+  wget -qO- https://raw.githubusercontent.com/retorquere/zotero-deb/master/install.sh | bash
 
-# Install panoply
-RUN cd /tmp && \
-  wget --user-agent="Mozilla/5.0" https://www.giss.nasa.gov/tools/panoply/download/PanoplyJ-5.5.4.tgz && \
-  tar -zxf PanoplyJ-5.5.4.tgz && \
-  rm -rf PanoplyJ-5.5.4.tgz
-ENV PATH=${PATH}:/tmp/PanoplyJ
+COPY . /tmp2/
+RUN /pyrocket_scripts/install-apt-packages.sh /tmp2/apt.txt || echo "install-apt-packages.sh failed" || true
+RUN rm -rf /tmp2
 
 USER ${NB_USER}
 WORKDIR ${HOME}

draft_images/test/apt.txt

@@ -1,3 +1,2 @@
-# for qgis
-libgl1-mesa-glx
+zotero