more cleanup of set up files

_quarto.yml

@@ -33,6 +33,18 @@ website:
           - overview.md
           - team.md
           - setup.qmd
+          - section: Orientation
+            contents:
+            - text: RStudio
+              href: content/02-rstudio.qmd
+            - text: Earthdata login
+              href: content/02-earthdata.md
+            - text: Local set-up
+              href: content/02-local-setup.qmd
+            - text: Git-JupyterLab
+              href: content/02-git-jupyter.md
+            - text: Git-RStudio
+              href: content/02-git-rstudio.md
           - coc.md
       - section: "Tutorials"
         contents:

content/02-git-jupyter.md

@@ -117,7 +117,7 @@ https://github.com/nmfs-opensci/Git-Lesson
 
 3.  Click "Clone a Repository"
 
-4.  Where it says "Enter the URI of the remote Git repository", paste in the URL https://github.com/nmfs-opensci/Git-Lesson
+4.  Where it says "Enter the URI of the remote Git repository", paste in the URL https://github.com/nmfs-opensci/EDMW-EarthData-Workshop-2024
 
 5. The folder appears and you can enter the folder and edit and create files.
 

content/03-git-rstudio.md → content/02-git-rstudio.md

@@ -8,6 +8,7 @@ title: Basic Git/GitHub Skills Using RStudio
 
 - Set up Git in the JupyterHub
 - Learn how to use the Git GUI in RStudio
+- Clone GitHub repositories to RStudio = get the repo into RStudio
 - Practice 4 basic Git/GitHub skills: cloning, committing, push/pull
 
 :::

content/02-local-setup.qmd

@@ -0,0 +1,41 @@
+---
+title: Setting up on your computer
+---
+
+
+Here are instructions for installing on your own computer.
+
+Install the development version of earthdatalogin and update terra.
+
+```{r eval=FALSE}
+devtools::install_github("boettiger-lab/earthdatalogin")
+install.packages("terra")
+install.packages("rstac")
+install.packages("gdalcubes")
+install.packages("here")
+
+library("earthdatalogin")
+library("terra")
+library("rstac")
+library("gdalcubes")
+library("here")
+```
+
+You will need GDAL installed. See these instructions if you do not have it installed:  https://developers.planet.com/docs/integrations/qgis/install-qgis-gdal/
+
+You may need to install `terra` and `sf` from source to get them to use the latest GDAL installation. 
+
+```{r eval=FALSE}
+install.packages("terra", type = "source")
+install.packages("sf", type = "source")
+sf_extSoftVersion()
+```
+
+The environment we are using today is the `py-rocket-geospatial` image. This is part of work on a [Data Science Docker Stack](https://github.com/nmfs-opensci/container-images) for NOAA Fisheries.
+
+
+# R Version Metadata
+
+```{r}
+sessionInfo()
+```