Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add missing hackathon groups #2800

Merged
merged 7 commits into from
Oct 19, 2024
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
50 changes: 50 additions & 0 deletions sites/main-site/src/content/events/2024/hackathon-barcelona.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -243,6 +243,44 @@ You can move freely between projects throughout the event.

</HackathonGroup>

<HackathonGroup
title="nf-core/variantbenchmarking"
category="pipelines"
leaders={{
'kubranarci': 'Kübra Narcı'
}}
goal="I would like to have the first version of this pipeline published"
slack="variantbenchmarking"
>
This is a variant benchmarking pipeline, for now structural variant and small benchmarking
parts for germlines are working, yet there are plans for addin g somatic benchmarking including
creation of a truth file for structural variants and adding some benchmark tools. The pipeline
needs to be tested extensively and a set of reviews is required.

</HackathonGroup>

<HackathonGroup
title="nf-core/proteinfold"
category="pipelines"
leaders={{
'JoseEspinosa': 'Jose Espinosa-Carrasco'
}}
goal="Towards release 1.2.0 and beyond"
slack="proteinfold"
>
We have adding new reporting capabilities to the pipeline lately and we would like to finish
adding this features and testing them during the hackathon.

A part from this, we would like to explore which other tools could be added to the pipeline (e.g. RoseTTAFold or
OmegaFold) and discuss with the community what should be the future of the pipeline in terms of development.

Of course, as any other pipeline we would try to find other more "house-keeping" issues in which people joining the
group could get involved during the hackathon.

If you are interested please join the group!

</HackathonGroup>

## Components

<HackathonGroup
Expand Down Expand Up @@ -275,6 +313,18 @@ You can move freely between projects throughout the event.

</HackathonGroup>

<HackathonGroup
title="Software packaging: ARM"
category="components"
leaders={{'dslarm': 'David Lecomber'}}
goal="Optimise run time on at least one tool"
>
Looking into making more packages build natively for `linux/arm64` and improving
performance of the important ones for faster and cheaper runs on ARM machines
such as AWS Graviton.

</HackathonGroup>

## Tooling

<HackathonGroup
Expand Down
Loading