[automated] Update json files and markdown cache

nf-core · Feb 9, 2024 · 499746f · 499746f
1 parent bf54045
commit 499746f
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Showing 3 changed files with 161 additions and 61 deletions.
diff --git a/.cache.tar.xz b/.cache.tar.xz
diff --git a/public/components.json b/public/components.json
@@ -3998,6 +3998,10 @@
           "name": "rnafusion",
           "version": "3.0.1"
         },
+        {
+          "name": "rnafusion",
+          "version": "3.0.1"
+        },
         {
           "name": "rnafusion",
           "version": "3.0.1"
@@ -37385,6 +37389,10 @@
           "name": "rnadnavar",
           "version": "dev"
         },
+        {
+          "name": "rnadnavar",
+          "version": "dev"
+        },
         {
           "name": "rnadnavar",
           "version": "dev"
@@ -38810,6 +38818,10 @@
           "name": "rnadnavar",
           "version": "dev"
         },
+        {
+          "name": "rnadnavar",
+          "version": "dev"
+        },
         {
           "name": "rnadnavar",
           "version": "dev"
@@ -43387,6 +43399,10 @@
           "name": "rnadnavar",
           "version": "dev"
         },
+        {
+          "name": "rnadnavar",
+          "version": "dev"
+        },
         {
           "name": "rnadnavar",
           "version": "dev"
@@ -97038,6 +97054,78 @@
         ]
       }
     },
+    {
+      "name": "seqkit_concat",
+      "path": "modules/nf-core/seqkit/concat/meta.yml",
+      "type": "module",
+      "meta": {
+        "name": "seqkit_concat",
+        "description": "Concatenating multiple uncompressed sequence files together",
+        "keywords": [
+          "concat",
+          "fasta",
+          "fastq",
+          "merge"
+        ],
+        "tools": [
+          {
+            "seqkit": {
+              "description": "Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.\n",
+              "homepage": "https://github.com/shenwei356/seqkit",
+              "documentation": "https://bioinf.shenwei.me/seqkit/",
+              "tool_dev_url": "https://github.com/shenwei356/seqkit",
+              "doi": "10.1371/journal.pone.0163962",
+              "licence": [
+                "MIT"
+              ]
+            }
+          }
+        ],
+        "input": [
+          {
+            "meta": {
+              "type": "map",
+              "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+            }
+          },
+          {
+            "input": {
+              "type": "file",
+              "description": "Sequence file in fasta/q format",
+              "pattern": "*.{fasta,fastq,fa,fq,fas,fna,faa}"
+            }
+          }
+        ],
+        "output": [
+          {
+            "meta": {
+              "type": "map",
+              "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+            }
+          },
+          {
+            "fastx": {
+              "type": "file",
+              "description": "A concatenated sequence file",
+              "pattern": "*.{fasta,fastq,fa,fq,fas,fna,faa}"
+            }
+          },
+          {
+            "versions": {
+              "type": "file",
+              "description": "File containing software versions",
+              "pattern": "versions.yml"
+            }
+          }
+        ],
+        "authors": [
+          "@DLBPointon"
+        ],
+        "maintainers": [
+          "@DLBPointon"
+        ]
+      }
+    },
     {
       "name": "seqkit_fx2tab",
       "path": "modules/nf-core/seqkit/fx2tab/meta.yml",
@@ -122362,6 +122450,10 @@
           "name": "fetchngs",
           "version": "1.11.0"
         },
+        {
+          "name": "fetchngs",
+          "version": "1.11.0"
+        },
         {
           "name": "fetchngs",
           "version": "1.11.0"
@@ -123203,6 +123295,10 @@
           "name": "fetchngs",
           "version": "1.11.0"
         },
+        {
+          "name": "fetchngs",
+          "version": "1.11.0"
+        },
         {
           "name": "fetchngs",
           "version": "1.11.0"
@@ -124077,6 +124173,10 @@
           "name": "fetchngs",
           "version": "1.11.0"
         },
+        {
+          "name": "fetchngs",
+          "version": "1.11.0"
+        },
         {
           "name": "fetchngs",
           "version": "1.11.0"