Open PR with tools API docs based on webhook call #127
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| name: Open PR with tools API docs based on webhook call | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| ref_name: | |
| description: 'The name of the release branch' | |
| required: true | |
| default: 'dev' | |
| jobs: | |
| api-docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4 | |
| - name: Checkout tools code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4 | |
| with: | |
| repository: 'nf-core/tools' | |
| ref: ${{ inputs.ref_name }} | |
| path: 'tools' | |
| - name: setup node | |
| uses: actions/setup-node@39370e3970a6d050c480ffad4ff0ed4d3fdee5af # v4 | |
| with: | |
| node-version: '20' | |
| - name: Install dependencies | |
| run: | | |
| npm install remark unist-util-visit | |
| # Install pre-commit | |
| - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5 | |
| with: | |
| python-version: 3.11 | |
| # install prettier plugins | |
| - run: npm install --only=dev | |
| - name: Install pre-commit | |
| run: pip install pre-commit | |
| - name: install nf-core | |
| run: | | |
| cd tools | |
| pip install --upgrade -r requirements-dev.txt -e . | |
| - name: run API generation script | |
| run: | | |
| cd tools | |
| pip install sphinx-markdown-builder | |
| bash docs/api/generate-api-docs.sh --release ${{ inputs.ref_name }} | |
| - name: remove tools code | |
| run: rm -rf tools | |
| - name: Run pre-commit | |
| id: pre-commit | |
| run: git add . && pre-commit run --all-files | |
| continue-on-error: true | |
| - name: Commit & push changes | |
| id: commit-and-push | |
| run: | | |
| git config user.email "[email protected]" | |
| git config user.name "nf-core-bot" | |
| # restore package.json changes | |
| git restore package.json | |
| git restore package-lock.json | |
| git add . | |
| git status | |
| git commit -m "[automated] Update nf-core/tools API docs for ${{ inputs.ref_name }}" | |
| - name: Create PR | |
| uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f # v7 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| commit-message: Update nf-core/tools API docs for ${{inputs.ref_name}} | |
| title: Update nf-core/tools API docs for ${{inputs.ref_name}} | |
| body: | | |
| This PR updates the nf-core/tools API docs for ${{inputs.ref_name}}. | |
| Please review the changes and merge if they look good. | |
| branch: 'update-api-docs-${{inputs.ref_name}}' | |
| delete-branch: true | |
| base: 'main' | |
| draft: false |