Skip to content

Commit

Permalink
template line break fixes
Browse files Browse the repository at this point in the history
  • Loading branch information
mirpedrol committed Jan 27, 2025
1 parent 92408c3 commit 0d9a4f1
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions nf_core/pipeline-template/docs/output.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
{% if fastqc -%}

- [FastQC](#fastqc) - Raw read QC{% endif %}
{%- if multiqc -%}
{%- if multiqc %}
- [MultiQC](#multiqc) - Aggregate report describing results and QC from the whole pipeline
{%- endif %}
- [Pipeline information](#pipeline-information) - Report metrics generated during the workflow execution
Expand All @@ -34,7 +34,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
</details>

[FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) gives general quality metrics about your sequenced reads. It provides information about the quality score distribution across your reads, per base sequence content (%A/T/G/C), adapter contamination and overrepresented sequences. For further reading and documentation see the [FastQC help pages](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/).
{%- endif -%}
{%- endif %}

{% if multiqc -%}

Expand All @@ -53,7 +53,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
[MultiQC](http://multiqc.info) is a visualization tool that generates a single HTML report summarising all samples in your project. Most of the pipeline QC results are visualised in the report and further statistics are available in the report data directory.

Results generated by MultiQC collate pipeline QC from supported tools e.g. FastQC. The pipeline has special steps which also allow the software versions to be reported in the MultiQC output for future traceability. For more information about how to use MultiQC reports, see <http://multiqc.info>.
{%- endif -%}
{%- endif %}

### Pipeline information

Expand Down

0 comments on commit 0d9a4f1

Please sign in to comment.