Fix mirtop quant conda env

CHANGELOG.md

@@ -5,6 +5,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## v2.3.2dev - 2024-XX-XX - X
 
+- [[#349]](https://github.com/nf-core/smrnaseq/pull/349) - Fix [MIRTOP_QUANT conda issue](https://github.com/nf-core/smrnaseq/issues/347), change conda-base to conda-forge channel
+- [[#350]](https://github.com/nf-core/smrnaseq/pull/350) - Fix [MIRTOP_QUANT conda issue](https://github.com/nf-core/smrnaseq/issues/347), set python version to 3.7 to fix pysam issue
+
 ## v2.3.1 - 2024-04-18 - Gray Zinc Dalmation Patch
 
 - [[#328]](https://github.com/nf-core/smrnaseq/pull/328) - Fix [casting issue](https://github.com/nf-core/smrnaseq/issues/327) in mirtrace module

modules.json

@@ -96,7 +96,7 @@
                     },
                     "utils_nfcore_pipeline": {
                         "branch": "master",
-                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
+                        "git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nfvalidation_plugin": {

modules/local/mirtop_quant.nf

@@ -1,7 +1,7 @@
 process MIRTOP_QUANT {
     label 'process_medium'
 
-    conda 'mirtop=0.4.25 bioconda::samtools=1.15.1 conda-forge::r-base=4.1.1 conda-forge::r-data.table=1.14.2'
+    conda 'mirtop=0.4.25 bioconda::samtools=1.15.1 conda-forge::r-base=4.1.1 conda-forge::r-data.table=1.14.2 python=3.7'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-0c13ef770dd7cc5c76c2ce23ba6669234cf03385:63be019f50581cc5dfe4fc0f73ae50f2d4d661f7-0' :
         'biocontainers/mulled-v2-0c13ef770dd7cc5c76c2ce23ba6669234cf03385:63be019f50581cc5dfe4fc0f73ae50f2d4d661f7-0' }"