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Important! Template update for nf-core/tools v2.13 #318

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merged 25 commits into from
Feb 22, 2024

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Version 2.13 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.13 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.13 release page.

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github-actions bot commented Feb 21, 2024

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit c5e8393

+| ✅ 181 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 2.3.0
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required

❔ Tests ignored:

  • nextflow_config - Config default ignored: params.fastp_known_mirna_adapters

✅ Tests passed:

Run details

  • nf-core/tools version 2.13
  • Run at 2024-02-22 15:08:20

@apeltzer apeltzer merged commit e0ad3fb into dev Feb 22, 2024
10 checks passed
@apeltzer apeltzer mentioned this pull request Feb 22, 2024
10 tasks
@apeltzer apeltzer deleted the nf-core-template-merge-2.13 branch February 29, 2024 08:33
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3 participants