Skip to content

Commit

Permalink
Pre-commit
Browse files Browse the repository at this point in the history
  • Loading branch information
nschcolnicov committed Sep 26, 2024
1 parent 998ec83 commit fc3c5f9
Showing 1 changed file with 36 additions and 113 deletions.
149 changes: 36 additions & 113 deletions modules.json
Original file line number Diff line number Diff line change
Expand Up @@ -8,207 +8,144 @@
"bioawk": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"modules"
],
"installed_by": ["modules"],
"patch": "modules/nf-core/bioawk/bioawk.diff"
},
"blat": {
"branch": "master",
"git_sha": "49852039cccef84bbf5a3c0e069fac81fa3f0202",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bowtie/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bowtie/build": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"csvtk/join": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"fastq_fastqc_umitools_fastp",
"modules"
]
"installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"fastq_fastqc_umitools_fastp"
]
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"gawk": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"mirtop/counts": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": [
"bam_stats_mirna_mirtop"
]
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/export": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": [
"bam_stats_mirna_mirtop"
]
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/gff": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": [
"bam_stats_mirna_mirtop"
]
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/stats": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": [
"bam_stats_mirna_mirtop"
]
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtrace/qc": {
"branch": "master",
"git_sha": "6dd363c9b9b7cf30c4418597d20b6861848f0475",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "7c316cae26baf55e0add993bed2b0c9f7105c653",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"pigz/uncompress": {
"branch": "master",
"git_sha": "c00055a0b13d622b4f1f51a8e5be31deaf99ded7",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": [
"bam_stats_samtools",
"modules"
]
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": [
"bam_stats_samtools",
"modules"
]
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": [
"bam_sort_stats_samtools",
"modules"
]
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": [
"bam_sort_stats_samtools",
"modules"
]
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": [
"bam_stats_samtools",
"modules"
]
"installed_by": ["bam_stats_samtools", "modules"]
},
"seqcluster/collapse": {
"branch": "master",
"git_sha": "407ff4b579f5ae5a3b842b675cd75005d112b8ba",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"seqkit/grep": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"modules"
],
"installed_by": ["modules"],
"patch": "modules/nf-core/seqkit/grep/seqkit-grep.diff"
},
"umicollapse": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"umitools/extract": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": [
"fastq_fastqc_umitools_fastp",
"modules"
]
"installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
},
"untarfiles": {
"branch": "master",
"git_sha": "958e4a6031deefa327f339f11d9baf1ab5a32d5f",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
}
}
},
Expand All @@ -217,54 +154,40 @@
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"bam_stats_mirna_mirtop": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": [
"bam_sort_stats_samtools"
]
"installed_by": ["bam_sort_stats_samtools"]
},
"fastq_fastqc_umitools_fastp": {
"branch": "master",
"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
}
}
}
}
}
}
}

0 comments on commit fc3c5f9

Please sign in to comment.