Fixing some lint warnings

nf-core · Jan 12, 2024 · eed0895 · eed0895
1 parent 227af28
commit eed0895
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Showing 6 changed files with 6 additions and 6 deletions.
diff --git a/modules/local/bowtie_contaminants.nf b/modules/local/bowtie_contaminants.nf
@@ -4,7 +4,7 @@ process INDEX_CONTAMINANTS {
     conda 'bowtie2=2.4.5'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bowtie2:2.4.5--py39hd2f7db1_2' :
-        'biocontainers/bowtie2:2.4.5--py36hfca12d5_2'}"
+        'biocontainers/bowtie2:2.4.5--py39hd2f7db1_2'}"
 
     input:
     path fasta

diff --git a/modules/local/bowtie_genome.nf b/modules/local/bowtie_genome.nf
@@ -4,7 +4,7 @@ process INDEX_GENOME {
 
     conda 'bioconda::bowtie=1.3.1-4'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bowtie%3A1.3.1--py39hd400a0c_2' :
+        'https://depot.galaxyproject.org/singularity/bowtie:1.3.1--py310h4070885_4' :
         'biocontainers/bowtie:1.3.1--py310h4070885_4' }"
 
     input:

diff --git a/modules/local/bowtie_map_contaminants.nf b/modules/local/bowtie_map_contaminants.nf
@@ -4,7 +4,7 @@ process BOWTIE_MAP_CONTAMINANTS {
     conda 'bowtie2=2.4.5'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bowtie2:2.4.5--py39hd2f7db1_2' :
-        'biocontainers/bowtie2:2.4.5--py36hfca12d5_2' }"
+        'biocontainers/bowtie2:2.4.5--py39hd2f7db1_2' }"
 
     input:
     tuple val(meta), path(reads)

diff --git a/modules/local/bowtie_mirna.nf b/modules/local/bowtie_mirna.nf
@@ -3,7 +3,7 @@ process INDEX_MIRNA {
 
     conda 'bioconda::bowtie=1.3.0-2'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/bowtie%3A1.3.1--py39hd400a0c_2' :
+        'https://depot.galaxyproject.org/singularity/bowtie:1.3.1--py310h4070885_4' :
         'biocontainers/bowtie:1.3.1--py310h4070885_4' }"
 
     input:

diff --git a/modules/local/filter_stats.nf b/modules/local/filter_stats.nf
@@ -4,7 +4,7 @@ process FILTER_STATS {
     conda 'bowtie2=2.4.5'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bowtie2:2.4.5--py39hd2f7db1_2' :
-        'biocontainers/bowtie2:2.4.5--py36hfca12d5_2' }"
+        'biocontainers/bowtie2:2.4.5--py39hd2f7db1_2' }"
 
     input:
     tuple val(meta), path(reads)

diff --git a/modules/local/seqcluster_collapse.nf b/modules/local/seqcluster_collapse.nf
@@ -5,7 +5,7 @@ process SEQCLUSTER_SEQUENCES {
     conda 'bioconda::seqcluster=1.2.9-0'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/seqcluster:1.2.9--pyh5e36f6f_0' :
-        'biocontainers/seqcluster:1.2.8--pyh5e36f6f_0' }"
+        'biocontainers/seqcluster:1.2.9--pyh5e36f6f_0' }"
 
     input:
     tuple val(meta), path(reads)