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nf-core · Jan 18, 2024 · a5daf6b · a5daf6b
1 parent 3776e18
commit a5daf6b
Showing 1 changed file with 0 additions and 10 deletions.
diff --git a/subworkflows/local/mirna_quant.nf b/subworkflows/local/mirna_quant.nf
@@ -33,8 +33,6 @@ workflow MIRNA_QUANT {
     main:
     ch_versions = Channel.empty()
 
-
-
     PARSE_MATURE ( mature ).parsed_fasta.set { mirna_parsed }
     ch_versions = ch_versions.mix(PARSE_MATURE.out.versions)
 
@@ -78,7 +76,6 @@ workflow MIRNA_QUANT {
     ch_versions = ch_versions.mix(BAM_STATS_HAIRPIN.out.versions)
 
 
-
     BAM_STATS_MATURE.out.idxstats.collect{it[1]}
         .mix(BAM_STATS_HAIRPIN.out.idxstats.collect{it[1]})
         .dump(tag:'edger')
@@ -87,8 +84,6 @@ workflow MIRNA_QUANT {
         .set { edger_input }
     EDGER_QC ( edger_input )
 
-
-
     reads
         .map { add_suffix(it, "seqcluster") }
         .dump (tag:'ssux')
@@ -100,9 +95,6 @@ workflow MIRNA_QUANT {
     BOWTIE_MAP_SEQCLUSTER ( reads_collapsed, hairpin_bowtie.collect() )
     ch_versions = ch_versions.mix(BOWTIE_MAP_SEQCLUSTER.out.versions)
 
-
-
-
     ch_mirtop_logs = Channel.empty()
     if (params.mirtrace_species){
         MIRTOP_QUANT ( BOWTIE_MAP_SEQCLUSTER.out.bam.collect{it[1]}, FORMAT_HAIRPIN.out.formatted_fasta.collect{it[1]}, gtf )
@@ -117,8 +109,6 @@ workflow MIRNA_QUANT {
         .dump (tag:'gsux')
         .set { reads_genome }
 
-
-
     emit:
     fasta_mature        = FORMAT_MATURE.out.formatted_fasta
     fasta_hairpin       = FORMAT_HAIRPIN.out.formatted_fasta