Update mirna_quant.nf

nf-core · Aug 26, 2024 · 65d5b4c · 65d5b4c
1 parent b7855df
commit 65d5b4c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/subworkflows/local/mirna_quant.nf b/subworkflows/local/mirna_quant.nf
@@ -98,7 +98,7 @@ workflow MIRNA_QUANT {
     //This block doesn't run if the channel mirtrace_species is empty
     ch_mirtop_logs = Channel.empty()
     if (mirtrace_species != ""){
-        MIRTOP_QUANT ( BOWTIE_MAP_SEQCLUSTER.out.bam.collect{it[1]}, FORMAT_HAIRPIN.out.formatted_fasta.collect{it[1]}, gtf )
+        MIRTOP_QUANT ( BOWTIE_MAP_SEQCLUSTER.out.bam.collect{it[1]}, FORMAT_HAIRPIN.out.formatted_fasta.collect{it[1]}, gtf, mirtrace_species )
         ch_mirtop_logs = MIRTOP_QUANT.out.logs
         ch_versions = ch_versions.mix(MIRTOP_QUANT.out.versions)