use the channels, luke

nf-core · Jan 17, 2024 · 12be186 · 12be186
1 parent 1410923
commit 12be186
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/smrnaseq.nf b/workflows/smrnaseq.nf
@@ -160,7 +160,7 @@ workflow SMRNASEQ {
             fasta_ch = file(params.fasta)
 
             //This needs to be done here as GENOME_QUANT should not run prior to the deduplication of UMIs.
-            INDEX_GENOME ( [ [:], fasta ] )
+            INDEX_GENOME ( [ [:], fasta_ch ] )
 
             ch_versions = ch_versions.mix(INDEX_GENOME.out.versions)