nf-core linting

Important! Template update for nf-core/tools v3.0.1 #374

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GitHub Actions / JUnit Test Report failed Oct 11, 2024 in 0s

2 tests run, 0 passed, 0 skipped, 2 failed.

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Check failure on line 1 in Test Workflow UTILS_NEXTFLOW_PIPELINE

github-actions / JUnit Test Report

Test Workflow UTILS_NEXTFLOW_PIPELINE.Should not create params JSON if no output directory

Assertion failed: 

1 of 1 assertions failed

Raw output


            Nextflow stdout:

N E X T F L O W  ~  version 24.09.0-edge
ERROR ~ Unknown config attribute `params.pipelines_testdata_base_path` -- check config file: /home/runner/work/rnavar/rnavar/conf/test.config

 -- Check '/home/runner/work/rnavar/rnavar/.nf-test/tests/66f94decc9544289987005c84125c75b/meta/nextflow.log' file for details
Nextflow stderr:

Check failure on line 1 in Test Subworkflow UTILS_NFSCHEMA_PLUGIN

github-actions / JUnit Test Report

Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema

Assertion failed: 

1 of 2 assertions failed

Raw output


            Nextflow stdout:

N E X T F L O W  ~  version 24.09.0-edge
ERROR ~ Unknown config attribute `params.pipelines_testdata_base_path` -- check config file: /home/runner/work/rnavar/rnavar/conf/test.config

 -- Check '/home/runner/work/rnavar/rnavar/.nf-test/tests/def113777a7f17026d12cc4798662ccd/meta/nextflow.log' file for details
Nextflow stderr:

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