Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added spaces to modules include #4

Merged
merged 2 commits into from
Mar 19, 2024
Merged

Added spaces to modules include #4

Changes from 1 commit
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
62b962f
Added spaces to modules include
nschcolnicov Mar 18, 2024
f2c30a8
Pulled dev
nschcolnicov Mar 18, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 4 additions & 4 deletions workflows/phaseimpute.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,13 +7,13 @@
//
// MODULE: Installed directly from nf-core/modules
//
include { MULTIQC } from '../modules/nf-core/multiqc/main'
include { MULTIQC } from '../modules/nf-core/multiqc/main'
include { paramsSummaryMap } from 'plugin/nf-validation'
include { paramsSummaryMultiqc } from '../subworkflows/nf-core/utils_nfcore_pipeline'
include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline'
include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_phaseimpute_pipeline'
include { SAMTOOLS_FAIDX } from '../modules/nf-core/samtools/faidx/main'
include { BAM_REGION } from '../subworkflows/local/bam_region'
include { SAMTOOLS_FAIDX } from '../modules/nf-core/samtools/faidx/main'
include { BAM_REGION } from '../subworkflows/local/bam_region'

//
// SUBWORKFLOW: Consisting of a mix of local and nf-core/modules
Expand Down Expand Up @@ -153,7 +153,7 @@ workflow PHASEIMPUTE {
VCF_IMPUTE_GLIMPSE(impute_input,
GET_PANEL.out.panel_phased,
ch_map)

ch_impute_output = ch_impute_output.mix(VCF_IMPUTE_GLIMPSE.out.)
}
if (params.tools.contains("glimpse2")){
Expand Down