Add auto detection of chr prefix and auto fixing#20

Merged

LouisLeNezet merged 18 commits intonf-core:devfrom LouisLeNezet:auto_chr_rename

Mar 29, 2024

+822-221

Commits on Mar 22, 2024

Add auto detection of chr prefix and auto fixing
LouisLeNezet
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Delete println
LouisLeNezet
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Remove trailing whitespace
LouisLeNezet
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Commits on Mar 24, 2024

Separate check to function, and renaming from check
LouisLeNezet
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Update changelog
LouisLeNezet
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Update grep version for vcfchrextract
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Delete unecessary spaces
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Fix linting eclint
LouisLeNezet
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Commits on Mar 25, 2024

Add more test to vcf_chr tests
LouisLeNezet
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Commits on Mar 27, 2024

Update default compression of annotate and shema extension of panel index
LouisLeNezet
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Update config files for nf-test
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Add end new line to config files
LouisLeNezet
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Add environment for fai to chr
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Replace faitochr by gawk command
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Remove unecessary file
LouisLeNezet
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Merge branch 'dev' into auto_chr_rename
LouisLeNezet
authored

Commits on Mar 29, 2024

Update nextflow_schema.json

LouisLeNezet
and
atrigila
authored
Update CHANGELOG.md

LouisLeNezet
and
atrigila
authored