Skip to content

Commit

Permalink
Reset changes
Browse files Browse the repository at this point in the history
  • Loading branch information
LouisLeNezet committed Nov 22, 2024
1 parent 2e54095 commit ca67cbb
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/output.md
Original file line number Diff line number Diff line change
Expand Up @@ -168,7 +168,7 @@ The results from `--steps validate` will have the following directory structure:
- `samples/*.vcf.gz`: A VCF of each truth sample.
- `samples/*.vcf.gz.tbi`: A tbi for the truth VCF.
- `stats/`:
- `*.bcftools_stats.txt`: The statistics of the truth VCF target file produced by [`BCFTOOLS_STATS`](https://samtools.github.io/bcftools/bcftools.html#stats.)
- `*.truth.bcftools_stats.txt`: The statistics of the truth VCF target file produced by [`BCFTOOLS_STATS`](https://samtools.github.io/bcftools/bcftools.html#stats.)
- `*.P<panel name>_T<imputation tool>_SNP.txt`: Concordance metrics of the SNP variants obtained with [`GLIMPSE2_CONCORDANCE`](https://odelaneau.github.io/GLIMPSE/docs/documentation/concordance/).
- `AllSamples.txt`: Aggregation of the above `GLIMPSE_CONCORDANCE` output across samples and tools.

Expand Down

0 comments on commit ca67cbb

Please sign in to comment.