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Remove unecessary sbwf inclusion
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LouisLeNezet committed Nov 12, 2024
1 parent c600724 commit 2ca561d
Showing 1 changed file with 0 additions and 4 deletions.
4 changes: 0 additions & 4 deletions workflows/phaseimpute/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -42,23 +42,19 @@ include { VCF_SPLIT_BCFTOOLS } from '../../subworkflows/
include { BAM_GL_BCFTOOLS as GL_GLIMPSE1 } from '../../subworkflows/local/bam_gl_bcftools'
include { VCF_IMPUTE_GLIMPSE1 } from '../../subworkflows/local/vcf_impute_glimpse1'
include { VCF_CONCATENATE_BCFTOOLS as CONCAT_GLIMPSE1} from '../../subworkflows/local/vcf_concatenate_bcftools'
include { VCF_SPLIT_BCFTOOLS as SPLIT_GLIMPSE1 } from '../../subworkflows/local/vcf_split_bcftools'

// GLIMPSE2 subworkflows
include { BAM_IMPUTE_GLIMPSE2 } from '../../subworkflows/local/bam_impute_glimpse2'
include { VCF_CONCATENATE_BCFTOOLS as CONCAT_GLIMPSE2} from '../../subworkflows/local/vcf_concatenate_bcftools'
include { VCF_SPLIT_BCFTOOLS as SPLIT_GLIMPSE2 } from '../../subworkflows/local/vcf_split_bcftools'

// QUILT subworkflows
include { VCF_CHUNK_GLIMPSE } from '../../subworkflows/local/vcf_chunk_glimpse'
include { BAM_IMPUTE_QUILT } from '../../subworkflows/local/bam_impute_quilt'
include { VCF_CONCATENATE_BCFTOOLS as CONCAT_QUILT } from '../../subworkflows/local/vcf_concatenate_bcftools'
include { VCF_SPLIT_BCFTOOLS as SPLIT_QUILT } from '../../subworkflows/local/vcf_split_bcftools'

// STITCH subworkflows
include { BAM_IMPUTE_STITCH } from '../../subworkflows/local/bam_impute_stitch'
include { VCF_CONCATENATE_BCFTOOLS as CONCAT_STITCH } from '../../subworkflows/local/vcf_concatenate_bcftools'
include { VCF_SPLIT_BCFTOOLS as SPLIT_STITCH } from '../../subworkflows/local/vcf_split_bcftools'

// Imputation stats
include { BCFTOOLS_STATS as BCFTOOLS_STATS_TOOLS } from '../../modules/nf-core/bcftools/stats'
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