Skip to content

Commit

Permalink
Update CI workflow
Browse files Browse the repository at this point in the history
  • Loading branch information
LouisLeNezet committed Mar 21, 2024
1 parent 6a1d380 commit 19fadbf
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,9 @@ jobs:
NXF_VER:
- "23.04.0"
- "latest-everything"
TEST_PROFILE:
- "test"
- "test_sim"
steps:
- name: Check out pipeline code
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4
Expand All @@ -39,10 +42,9 @@ jobs:
- name: Disk space cleanup
uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

- name: Run pipeline with test data
- name: Run pipeline with test data "${{ matrix.TEST_PROFILE }}"
# TODO nf-core: You can customise CI pipeline run tests as required
# For example: adding multiple test runs with different parameters
# Remember that you can parallelise this by using strategy.matrix
run: |
nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results
nextflow run ${GITHUB_WORKSPACE} -profile test_sim,docker --outdir ./results
nextflow run ${GITHUB_WORKSPACE} -profile "${{ matrix.TEST_PROFILE }}",docker --outdir ./results

0 comments on commit 19fadbf

Please sign in to comment.