[ci skip] Merge PR 34684

Merge PR bioconda#34684, commits were: * Fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
nextstrain · May 3, 2022 · 025b0a8 · 025b0a8
1 parent 212a1a0
commit 025b0a8
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Showing 3 changed files with 17 additions and 6 deletions.
diff --git a/recipes/proteomiqon-labelfreeproteinquantification/build.sh b/recipes/proteomiqon-labelfreeproteinquantification/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+unzip $SRC_DIR/$PKG_VERSION
+PREFIX=$(echo "${PREFIX}" | tr '\\' '/')
+DOTNET_ROOT="${PREFIX}/lib/dotnet"
+TOOL_ROOT=$DOTNET_ROOT/tools/LabelFreeProteinQuantification
+
+mkdir -p $PREFIX/bin $TOOL_ROOT
+cp -r $SRC_DIR/tools/net5.0/any/* $TOOL_ROOT
+cp "$RECIPE_DIR/proteomiqon-labelfreeproteinquantification.sh" "$PREFIX/bin/proteomiqon-labelfreeproteinquantification"
+chmod +x "$PREFIX/bin/proteomiqon-labelfreeproteinquantification"
diff --git a/recipes/proteomiqon-labelfreeproteinquantification/meta.yaml b/recipes/proteomiqon-labelfreeproteinquantification/meta.yaml
@@ -11,15 +11,14 @@ source:
 
 build:
   noarch: generic
-  number: 0
-  script:
-    - dotnet tool install --add-source $SRC_DIR --tool-path $PREFIX/bin --version {{ version }} ProteomIQon.LabelFreeProteinQuantification
+  number: 1
 
 requirements:
   host:
-    - dotnet-sdk
+    - unzip
   run:
-    - dotnet-runtime
+    - dotnet-runtime =5.0
+    - openssl =1.1
 
 test:
   commands:
@@ -40,4 +39,4 @@ about:
     modification are skipped, the protein aggregation is performed on previously unaggregated peptides, where a peptidesequence can occur with different charge 
     states and modifications.
   dev_url: https://github.com/CSBiology/ProteomIQon
-  doc_url: https://csbiology.github.io/ProteomIQon/tools/LabelFreeProteinQuantification.html
+  doc_url: https://csbiology.github.io/ProteomIQon/tools/LabelFreeProteinQuantification.html
diff --git a/.../proteomiqon-labelfreeproteinquantification/proteomiqon-labelfreeproteinquantification.sh b/.../proteomiqon-labelfreeproteinquantification/proteomiqon-labelfreeproteinquantification.sh
@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+dotnet $CONDA_PREFIX/lib/dotnet/tools/LabelFreeProteinQuantification/ProteomIQon.LabelFreeProteinQuantification.dll "$@"
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		#!/usr/bin/env bash
		dotnet $CONDA_PREFIX/lib/dotnet/tools/LabelFreeProteinQuantification/ProteomIQon.LabelFreeProteinQuantification.dll "$@"