Support precomputed correlation matrix for calculating variance inflation term in Stouffers #219
Workflow file for this run
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| name: "Run Tests" | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| pull_request: | |
| branches: | |
| - "*" | |
| schedule: | |
| # Run tests every Sunday at 12am | |
| - cron: "0 0 * * 0" | |
| concurrency: | |
| group: environment-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # Determine if tests should be run based on commit message. | |
| check_skip: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| skip: ${{ steps.result_step.outputs.ci-skip }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - id: result_step | |
| uses: mstachniuk/ci-skip@master | |
| with: | |
| commit-filter: "[skip ci];[ci skip];[skip github]" | |
| commit-filter-separator: ";" | |
| run_tests: | |
| needs: check_skip | |
| if: ${{ needs.check_skip.outputs.skip == 'false' }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-12"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| name: ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: "Set up python" | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: "Display Python version" | |
| shell: bash {0} | |
| run: python -c "import sys; print(sys.version)" | |
| - name: "Install PyMARE" | |
| shell: bash {0} | |
| run: pip install -e .[tests,stan] | |
| - name: "Run tests" | |
| shell: bash {0} | |
| run: python -m pytest --pyargs pymare --cov=pymare | |
| - name: "Upload coverage to CodeCov" | |
| uses: codecov/codecov-action@v1 | |
| if: success() | |
| flake8-lint: | |
| runs-on: ubuntu-latest | |
| name: Lint with flake8 | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.8" | |
| - name: "Install the package" | |
| shell: bash {0} | |
| run: | | |
| python -m pip install --progress-bar off --upgrade pip setuptools wheel | |
| python -m pip install -e .[tests] | |
| - name: "Run flake8" | |
| shell: bash {0} | |
| run: | | |
| flake8 pymare |