Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Specification draft #1

Open
wants to merge 35 commits into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from 26 commits
Commits
Show all changes
35 commits
Select commit Hold shift + click to select a range
cab70ca
Update README.md
balbasty Dec 14, 2023
84644d4
Update README.md
balbasty Dec 14, 2023
506f446
Update README.md
balbasty Dec 14, 2023
3158a1e
Update README.md
balbasty Dec 14, 2023
9c5c367
Update README.md
balbasty Dec 14, 2023
0f598ec
Update README.md
balbasty Dec 14, 2023
141b567
Update README.md
balbasty Dec 14, 2023
de2fc00
Update README.md
balbasty Dec 14, 2023
1171f9b
Update README.md
balbasty Dec 14, 2023
eadcae6
Update README.md
balbasty Dec 14, 2023
a02b57a
Update README.md
balbasty Dec 14, 2023
1d776d3
Update README.md
balbasty Dec 14, 2023
5990727
Update README.md
balbasty Dec 14, 2023
0e65383
Update README.md
balbasty Dec 14, 2023
ad306ca
Update README.md
balbasty Dec 14, 2023
858910a
Update README.md
balbasty Dec 14, 2023
ed05bd1
Update README.md
balbasty Dec 14, 2023
f828307
Update README.md
balbasty Dec 14, 2023
30dc098
Update README.md
balbasty Dec 14, 2023
c76bc01
WIP: python converter
balbasty Dec 15, 2023
348ceae
Merge branch 'draft/0.1' of github.com:balbasty/nifti-zarr into draft…
balbasty Dec 15, 2023
ef702ae
Add TOC
balbasty Dec 15, 2023
6e37316
Add sentence on compression
balbasty Dec 15, 2023
1ce1e21
minor change
balbasty Dec 15, 2023
18f4195
Fixed coordinate transforms + pyramid
balbasty Dec 15, 2023
f01bdfd
typo
balbasty Dec 15, 2023
7494b03
Add skimage dependency
balbasty Dec 16, 2023
c56bbde
Fix axes order
balbasty Dec 16, 2023
e7e2c28
Neuroglancer example
balbasty Dec 16, 2023
dff3037
Merge branch 'draft/0.1' of github.com:balbasty/nifti-zarr into draft…
balbasty Dec 16, 2023
a0deab9
Forgot to save latest fileserver
balbasty Dec 16, 2023
9e17c63
Fix typos + add precision on future NGFF transforms
balbasty Dec 16, 2023
179020d
Latest notebook
balbasty Dec 16, 2023
219c4d0
Remove python impl now that it has its own branch
balbasty Dec 16, 2023
6fc4943
ENH(spec): say more about intensity scaling + add julia impl
balbasty Jan 2, 2024
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
599 changes: 593 additions & 6 deletions README.md

Large diffs are not rendered by default.

160 changes: 160 additions & 0 deletions python/.gitignore
Original file line number Diff line number Diff line change
@@ -0,0 +1,160 @@
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
.pybuilder/
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
# For a library or package, you might want to ignore these files since the code is
# intended to run in multiple environments; otherwise, check them in:
# .python-version

# pipenv
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
# However, in case of collaboration, if having platform-specific dependencies or dependencies
# having no cross-platform support, pipenv may install dependencies that don't work, or not
# install all needed dependencies.
#Pipfile.lock

# poetry
# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
# This is especially recommended for binary packages to ensure reproducibility, and is more
# commonly ignored for libraries.
# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
#poetry.lock

# pdm
# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
#pdm.lock
# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
# in version control.
# https://pdm.fming.dev/#use-with-ide
.pdm.toml

# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Cython debug symbols
cython_debug/

# PyCharm
# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
# and can be added to the global gitignore or merged into this file. For a more nuclear
# option (not recommended) you can uncomment the following to ignore the entire idea folder.
#.idea/
2 changes: 2 additions & 0 deletions python/niizarr/__init__.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
from ._nii2zarr import nii2zarr, nii2json # noqa: F401
from ._zarr2nii import zarr2nii, bin2nii # noqa: F401
Loading